PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022356P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 279aa    MW: 30317.2 Da    PI: 6.3661
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022356P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.62.9e-2741135186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rWt+qe+l+Li++++  e+r+r g+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ +++++s +++ ++l+
  MELO3C022356P2  41 RWTRQEILVLIQGKKVAETRVRGGRaaslafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREDTESFWVMRNDLR 135
                     8*********************875566777777**********************************************999999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.9E-1241131No hitNo description
Gene3DG3DSA:1.10.10.605.5E-541106IPR009057Homeodomain-like
PROSITE profilePS500906.441107IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MALQQLSLGP TPVDGVTNGV DVRPMSTDGG DDGSKTPRLP RWTRQEILVL IQGKKVAETR  60
VRGGRAASLA FGSGQVEPKW ASVSSYCKRH GVNRGPVQCR KRWSNLAGDF KKIKEWESQI  120
REDTESFWVM RNDLRRERKL PGFFDREVYD ILDSGSAPSP SPPLALALTP VPIPVPPHAL  180
NSDDGKPDAE PEHVFDSSKT AAADDGLFSD FEQDETSRSP LKEVAGKDVP PPTADGGIPA  240
PTPLSETLYR PPGHDCPDQG KLKTMLLHNN CGCLMVQS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459912.10.0PREDICTED: trihelix transcription factor ASR3 isoform X1
SwissprotQ8VZ209e-90ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1S3CCI20.0A0A1S3CCI2_CUCME; trihelix transcription factor ASR3 isoform X1
STRINGXP_008459912.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-86Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]