PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022318P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SBP
Protein Properties Length: 319aa    MW: 34775.2 Da    PI: 8.804
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022318P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP82.55.5e-2650116278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsr          krsCr+rL++hn+rrrk+q+
  MELO3C022318P1  50 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSR----------KRSCRKRLDGHNRRRRKPQP 116
                     **********************************************8..........9****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-214397IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.70947114IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.28E-2848119IPR004333Transcription factor, SBP-box
PfamPF031102.0E-1750113IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MYWELRGIGN MDERSMDDMK GTRVALIESS SSRLMKRSRA PGSGAQVPSC MVDGCSSDLS  60
KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRKRSC RKRLDGHNRR RRKPQPATMT  120
LNAGRFLYGN QGPRFLPFGN QLLSASSDVS SSWIGMIKPE NNAPLCGGNS QFDFTDRRKS  180
MLPGSLSSDY KEKQLAISCI PIGLLPKSSD TQPFLNVGSS NGGNVQKVLG NGSNRFFDSD  240
CALSLLSTPV EPGEINLSSM SQSNLIPPAH FIHSDGLGLE GDPISSGLVS DGSSDANIRC  300
YSTFQDGPDG SSGDLFRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-19501131184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195112RKRSCRKRLDGHNRRRRK
295113RKRSCRKRLDGHNRRRRKP
396113KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140535.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A0A0KAG40.0A0A0A0KAG4_CUCSA; Uncharacterized protein
STRINGXP_004170782.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-37SBP family protein