PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C022315P3

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 69aa MW: 7863.31 Da PI: 9.1785

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C022315P3	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.9	4.8e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie+ nr+vtf+kRr g+lKKA ELSvLCd+ev +i+f ++g+lye++s MELO3C022315P3 9 KLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCS 59 569**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.7E-26	1	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.324	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.7E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.1E-24	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MGRKKIEVKL IEDRCNRHVT FCKRRSGLLK KARELSVLCD VEVGIILFTN RGRLYEFCSG 60 NSECLLNC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
1tqe_R	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
1tqe_S	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
6c9l_A	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
6c9l_B	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
6c9l_C	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
6c9l_D	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
6c9l_E	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
6c9l_F	4e-18	1	66	1	66	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.
UniProt	Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269\|PubMed:15530395, ECO:0000269\|PubMed:25183521, ECO:0000269\|PubMed:7632923}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	7e-99	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	7e-99	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008459847.1	5e-38	PREDICTED: MADS-box transcription factor 8-like
Swissprot	P29383	1e-24	AGL3_ARATH; Agamous-like MADS-box protein AGL3
Swissprot	Q8LLR0	1e-24	MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBL	A0A1S3CCC5	1e-36	A0A1S3CCC5_CUCME; MADS-box transcription factor 8-like
STRING	XP_008459847.1	2e-37	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.1	5e-27	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Maejima K, et al. Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen. Plant Signal Behav, 2015. 10(8): p. e1042635 [PMID:26179462] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]