PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022315P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 190aa    MW: 21751.9 Da    PI: 4.9747
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022315P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.6e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ie+  nr+vtf+kRr g+lKKA ELSvLCd+ev +i+f ++g+lye++s
  MELO3C022315P1  9 KLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCS 59
                    569**********************************************96 PP
2K-box17.22.1e-071191672475
           K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                     Lkk+++++q++   +   + ++L++ ++ qLe+qLe  l ki+s++ e ++e
  MELO3C022315P1 119 LKKQLQTIQSQ---VEEPNFKKLDITQMVQLENQLEGTLDKIKSQRIEAMIE 167
                     56655555554...77778999**************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.324161IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-31160IPR002100Transcription factor, MADS-box
CDDcd002651.16E-32273No hitNo description
SuperFamilySSF554551.96E-27275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGRKKIEVKL IEDRCNRHVT FCKRRSGLLK KARELSVLCD VEVGIILFTN RGRLYEFCSG  60
NSLLNIIMRY QSHLQGRNES PIDNDLQGRS ESLIDSDAKD HVSDETILDV SDETILVSLK  120
KQLQTIQSQV EEPNFKKLDI TQMVQLENQL EGTLDKIKSQ RIEAMIENDD CWTYDMEIAM  180
GMINSPPFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-16186184Myocyte-specific enhancer factor 2B
1tqe_Q2e-16186184Myocyte-specific enhancer factor 2B
1tqe_R2e-16186184Myocyte-specific enhancer factor 2B
1tqe_S2e-16186184Myocyte-specific enhancer factor 2B
6c9l_A2e-16186184Myocyte-specific enhancer factor 2B
6c9l_B2e-16186184Myocyte-specific enhancer factor 2B
6c9l_C2e-16186184Myocyte-specific enhancer factor 2B
6c9l_D2e-16186184Myocyte-specific enhancer factor 2B
6c9l_E2e-16186184Myocyte-specific enhancer factor 2B
6c9l_F2e-16186184Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819252e-98LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132652e-98LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459847.11e-138PREDICTED: MADS-box transcription factor 8-like
TrEMBLA0A1S3CCC51e-136A0A1S3CCC5_CUCME; MADS-box transcription factor 8-like
STRINGXP_008459847.11e-137(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.13e-32MIKC_MADS family protein