PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022298P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 364aa    MW: 41579.8 Da    PI: 6.229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022298P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.31.9e-30100204198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SS. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...ldgr. 87 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+     ++ 
  MELO3C022298P1 100 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHraiP-SHs 193
                     89**************************99555567889***********************************************94322.333 PP

                     SEE..EEEEE- CS
              B3  88 sefelvvkvfr 98 
                      + +l++ ++r
  MELO3C022298P1 194 VNDRLFIDWRR 204
                     55556666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-4295206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-3097188IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-2598187No hitNo description
PROSITE profilePS5086314.24100206IPR003340B3 DNA binding domain
SMARTSM010199.5E-22100206IPR003340B3 DNA binding domain
PfamPF023624.5E-28100205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNFHKQDMEF LTKSTREDQD QDQEEDEEED EDQEQDQDLV ACNFFPNSHT QLTNQQDQDQ  60
DQESGNFECQ NEDHQPILMD LSLRMESNGF VDVVEREHMF DKVVTPSDVG KLNRLVIPKQ  120
HAEKYFPLDS STNDKGLILN FEDRHGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG  180
DIVSFHRAIP SHSVNDRLFI DWRRRRSDAP TPHHHHRHFS NPFLLRWGTT ARHLPQPPPL  240
PRRTTHHQHH LYPNYGFEIP NFGMSNINNS SMYYFRPSSS SSSLYRMGNG DELVVNNQGC  300
SSMGIINKPG SGAAKRLRLF GVNMECASPD GGGGGGGGGG EDVSNGGVPK RGKEPLSLNW  360
DLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-61932051113B3 domain-containing transcription factor NGA1
5os9_B2e-61932051113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459807.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2685e-68NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A1S3CAJ70.0A0A1S3CAJ7_CUCME; B3 domain-containing transcription factor NGA2-like
STRINGXP_008459807.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-66B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]