PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022265P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 248aa MW: 27587.5 Da PI: 9.1578 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.7 | 2.6e-38 | 25 | 85 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvP+Gg++rkn+++ MELO3C022265P1 25 PKEQLNCPRCKSNNTKFCYYNNYSLNQPRYFCKSCRRYWTEGGSLRNVPIGGASRKNRSKA 85 67899****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.3E-32 | 27 | 83 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-23 | 27 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEEKNPNYPC KLEMKMTKAT TTKAPKEQLN CPRCKSNNTK FCYYNNYSLN QPRYFCKSCR 60 RYWTEGGSLR NVPIGGASRK NRSKASSSTT TSTSSSSDYF CSNNNKNKKL PNYPSSSQIS 120 TQIPVGLRDL NLADHDHLPK VENVNNYNNF AFGFRGLSSF IPNLMPDSNN INNNGNLGIN 180 SSHYSQYSSS GFSLGDHVDE FKPSFGINSV DRRNLLLPFQ ELNQQSAAPN EGDDHQNWSG 240 MLGGGSL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459765.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7 | ||||
Refseq | XP_008459767.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A1S3CC55 | 0.0 | A0A1S3CC55_CUCME; dof zinc finger protein DOF3.7 | ||||
TrEMBL | E5GCN0 | 0.0 | E5GCN0_CUCME; F-box family protein | ||||
STRING | XP_008459765.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24548 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 9e-32 | Dof family protein |