PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022233P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 491aa    MW: 52510.8 Da    PI: 6.8636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022233P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15308353555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  MELO3C022233P1 308 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 353
                     9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-19301366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.593303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.44E-17308357No hitNo description
Gene3DG3DSA:4.10.280.102.6E-18308363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-13308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-18309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSQCVPNWDL SEPPPSSAAT GRPPFHSSSA ADDVVPLFEY EVAELTWENG QLAMHGLGLP  60
RVTGKVQNSG GGGGGGGVGS KFTWDNKPAR ASGTLESLVN QGTRHGKNNI SFDINTDDTA  120
HGGANDLAPW FSDHHRQTTT ASTADAMVPC DGDKSATAGG SAAKSSDIPV VAREEDEDCG  180
VIHGKRGRVV ARVVHASGEW STCRNQISVS GNRESGQKVT LNSTRVRNFA AVDGSVGFTA  240
TTATSQGSLD NTTSDKPCVK NTTVTTTDDH DSVCHSTHQV EEEDEGDRKK ENAKSSVSTK  300
RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSNKTDKAS MLDEVIEYLK QLQAQVQMMS  360
RMNMPMMLPM AMQQQLSMAP LMAPMGLGMG MGGMGMPLGM DHLNMLAGRS GLTAGMSPLL  420
HPTAFMPIPT WDGGTCTDQL QHSPTTMVAD PFSTFLACQQ QPMTMEAYNR IATMLQQLHQ  480
HTPTVGGSKN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316ERKRRD
2312317RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459727.10.0PREDICTED: transcription factor UNE10
TrEMBLA0A1S3CAX90.0A0A1S3CAX9_CUCME; transcription factor UNE10
STRINGXP_008459727.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-75bHLH family protein