PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022222P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 231aa    MW: 25073.2 Da    PI: 5.3795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022222P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.8e-13178223655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+e++P+     +k  + a++Le+AveY+k Lq
  MELO3C022222P1 178 SIAERVRRTRISDRIRKLQEVVPNM----DKQTNTADMLEEAVEYVKFLQ 223
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.634172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15175228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-13176227No hitNo description
Gene3DG3DSA:4.10.280.106.1E-15177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-10178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQSTTGAAAT ATASSRTSGG GPGLARFRSA PAAWLEALLE DDEEDPLKPN PCLTQLLAAN  60
SSDLVSAPGD HPLFDPNPSP AFHRQNSSPP EFLAPSGIAE GFYTSYPLNS SPTLDISPTS  120
KPATDVDAQN FFPKFSPQLK REGSGVSSLI DMEMEKLLED SVPCRVRAKR GCATHPRSIA  180
ERVRRTRISD RIRKLQEVVP NMDKQTNTAD MLEEAVEYVK FLQKQIQVFN *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459678.11e-167PREDICTED: transcription factor bHLH80 isoform X1
SwissprotQ9C8P81e-72BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A1S3CBY91e-166A0A1S3CBY9_CUCME; transcription factor bHLH80 isoform X1
STRINGXP_008459678.11e-166(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.14e-55bHLH family protein