PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022122P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Whirly
Protein Properties Length: 247aa    MW: 27300.3 Da    PI: 10.1098
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022122P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly180.92.4e-56702052137
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     vyk+kaa+++++ +ptf++++sgnl+++r+G+++l++a+a++erkydW +kq falsatev++l+++++k+sceffhdp++ +s +G+vrk l +
  MELO3C022122P1  70 VYKGKAAVSIEPCMPTFTKVESGNLIIDRRGSIMLTFAPAMGERKYDWTRKQLFALSATEVGSLISMGPKDSCEFFHDPGMLSSTAGQVRKNLAI 164
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     + ++dG G++++l+v n+ +++n+ +s+P + +ef+vl+++
  MELO3C022122P1 165 KAHTDGNGYMISLNVVNKPQNTNDFLSLPFTTGEFSVLKTA 205
                     **************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.2E-6758222IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.3E-5962245IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.8E-5570204IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSTSRMMKLT RLFSRNQLFE QIVCKKDGYV GHPLGSHPFS TRAGIPNITQ NFTHTVTKNA  60
GGRAFVSYHV YKGKAAVSIE PCMPTFTKVE SGNLIIDRRG SIMLTFAPAM GERKYDWTRK  120
QLFALSATEV GSLISMGPKD SCEFFHDPGM LSSTAGQVRK NLAIKAHTDG NGYMISLNVV  180
NKPQNTNDFL SLPFTTGEFS VLKTACSFAL PSLLGWDRVF NPNIGMGNGF QSKRIDREAL  240
SLEWER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A3e-74622199166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-74622199166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-74622199166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-74622199166Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818893e-61LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132633e-61LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459508.10.0PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0347e-77WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1S3CBJ90.0A0A1S3CBJ9_CUCME; single-stranded DNA-bindig protein WHY2, mitochondrial
STRINGXP_008459508.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-75WHIRLY 2