PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022091P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 397aa MW: 44923.2 Da PI: 8.3942 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 147.7 | 7.9e-46 | 121 | 272 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec......eaess 78 +kkdrhski+T++g+RdRRvRls+++ ++fFdLqd+LG+dk+skt++WLl+++ +aikelt+ s ss+s++ e+ + MELO3C022091P1 121 VKKDRHSKIYTAQGLRDRRVRLSIDISRKFFDLQDMLGYDKASKTLDWLLTKSRKAIKELTKKftqyhnnnnniitS-SSSSKFhfdhdfEECEV 214 79*************************************************************99988888887742.33322234444455566 PP TCP 79 sssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135 s+++ ++++++ +s++ +k+ + lakesrakarararert+ekm ++++ MELO3C022091P1 215 ISNDDDDEEAEKIIMLGkSSSNCKKNLGFHDVLAKESRAKARARARERTKEKMIMNQQ 272 66666555555555555366666777777788899*******************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-43 | 121 | 269 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.65 | 122 | 180 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.537 | 249 | 266 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MFSSTNNLHL FPLQQYFPSS SSSSPSYHHH HLVAPLPSPP PHHHHPEPVY IGPPQDPVLS 60 GVVAPIFLQV QEEDRDQARM KNEQQEVAVL MSQNGNNNNN SNGQCFSSST TLNNFTKKGS 120 VKKDRHSKIY TAQGLRDRRV RLSIDISRKF FDLQDMLGYD KASKTLDWLL TKSRKAIKEL 180 TKKFTQYHNN NNNIITSSSS SKFHFDHDFE ECEVISNDDD DEEAEKIIML GKSSSNCKKN 240 LGFHDVLAKE SRAKARARAR ERTKEKMIMN QQFRSPPPPP PQPSMPTPVV QKVAGSDQEN 300 NNIIGIMWKP SPMVTSSSSY QKNLVISKGE SCNYNNYCNN FYFPASNLTP NWDINIDSTF 360 ARTQSGFCSI ANMDSLPEFQ VCAKPWDSCN NNQHLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-14 | 127 | 180 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-14 | 127 | 180 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681889 | 0.0 | LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656282.1 | 0.0 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A0A0KSL1 | 0.0 | A0A0A0KSL1_CUCSA; Uncharacterized protein | ||||
STRING | XP_008459708.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 5e-29 | TCP family protein |