PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022014P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 507aa    MW: 55150.7 Da    PI: 8.1559
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022014P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.33.7e-34233289259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK vkgsefprsYY+Ct+ +Cpvkkk+ers  d++++ei+Y+g+Hnh+
  MELO3C022014P1 233 DDGYNWRKYGQKLVKGSEFPRSYYKCTHLNCPVKKKIERSP-DGQITEIIYKGQHNHD 289
                     8****************************************.***************7 PP
2WRKY106.11.8e-33392450159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+vers++d k+v++tYeg+Hnh+
  MELO3C022014P1 392 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHD 450
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.134227291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-29229291IPR003657WRKY domain
SuperFamilySSF1182902.75E-26230291IPR003657WRKY domain
SMARTSM007746.2E-38232290IPR003657WRKY domain
PfamPF031065.5E-26233289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-36378452IPR003657WRKY domain
SuperFamilySSF1182905.36E-29384452IPR003657WRKY domain
PROSITE profilePS5081139.02387452IPR003657WRKY domain
SMARTSM007745.8E-39392451IPR003657WRKY domain
PfamPF031061.7E-25393450IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAKKDDSAAR PPLQRPTITL PPRPSMEAFF TGGPTGVSPG PMTLLSSYFA DGAVDSPSFS  60
QLLAGAMASP MAMGFFGTGS TPNYYAKDGP GSELEFGMKQ SKPVNLVVAR SPLFSVPPGL  120
SPSGLLNSPG FYPPQSPFGM SHQQALAQVT AQAALANSHM HMQQAEYQHS SVPAPTEPLA  180
RDPSFSLDEA SQLAIIPSTS DTKSLIAEST EVSHSDRKYQ PPPPPHGSDK PADDGYNWRK  240
YGQKLVKGSE FPRSYYKCTH LNCPVKKKIE RSPDGQITEI IYKGQHNHDP PPANKRARDN  300
VEPAGCTNSL IKPECGLQNQ AGILNKSSEN VQLGSSDSEG RADTEITDDR DEDEPNPKRQ  360
NIDAGTSSVA LSHKTLTEPK IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP NPRSYYKCTS  420
AGCNVRKHVE RSSTDSKAVV TTYEGKHNHD VPAARNSSHH TVNNTVHHIK PLKVVAQKHP  480
LLKEMEFGTN DQRPAVLQLK EEQITV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38233453878Probable WRKY transcription factor 4
2lex_A5e-38233453878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840290.0GU984029.1 Cucumis sativus WRKY protein (WRKY37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459352.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-144WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1S3C9G60.0A0A1S3C9G6_CUCME; probable WRKY transcription factor 3
STRINGXP_008459352.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-131WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]