PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C021987P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 106aa MW: 11773.5 Da PI: 9.4856 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.8 | 4.8e-32 | 40 | 95 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY eC+kNhAa +Gg+avDGC+Efm+s g+egt+a+l+CaACgCHRnFHRr+v + MELO3C021987P1 40 SVRYGECQKNHAAGVGGYAVDGCREFMAS-GDEGTTAGLTCAACGCHRNFHRRQVGT 95 79**************************9.999********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-27 | 14 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-29 | 41 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-26 | 42 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.573 | 43 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MDLLLQFFFS LVQMRKRQVV LRRSEEPSRD TVASSFTVRS VRYGECQKNH AAGVGGYAVD 60 GCREFMASGD EGTTAGLTCA ACGCHRNFHR RQVGTEVHMR IKKVM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681889 | 1e-161 | LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051. | |||
GenBank | LN713263 | 1e-161 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016902406.1 | 6e-56 | PREDICTED: mini zinc finger protein 2 | ||||
Swissprot | Q9LJW5 | 1e-35 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A0A1S4E2E9 | 1e-54 | A0A1S4E2E9_CUCME; mini zinc finger protein 2 | ||||
STRING | XP_004168481.1 | 3e-58 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 5e-38 | mini zinc finger 2 |
Publications ? help Back to Top | |||
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