PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021964P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 265aa    MW: 29996.6 Da    PI: 4.8071
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021964P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.82.9e-4110108199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rr+C+kdC+lapyfpa+qpk f+n+h+lFG+ n++k+lk++++++++++m+s++ye+++r r P++G++gvi++l+ q++q+++el 
  MELO3C021964P1  10 ACAACKYQRRRCSKDCALAPYFPADQPKMFQNAHRLFGVCNIMKILKQVHPSQKDETMTSIIYESNMRSRFPIHGCCGVIWQLHYQIQQVAEELR 104
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  MELO3C021964P1 105 QVRS 108
                     9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.519110IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-3910107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTIKGGTSQA CAACKYQRRR CSKDCALAPY FPADQPKMFQ NAHRLFGVCN IMKILKQVHP  60
SQKDETMTSI IYESNMRSRF PIHGCCGVIW QLHYQIQQVA EELRQVRSRV DMVKEQFNQI  120
NNIGITEGEG VGILGNNDIG YPIYAQPQQQ QQYNSNSGSL VNQGIDGSDL LFGNLNMNNG  180
GIYVDNDDNN GLMLKELRIQ QHYNDNYGIN ISNVDSMLMQ SNLIPGAYPL QQEMEISHDY  240
DDQIAFDTIA DDRQSYIESK EACDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2661037104LOB family transfactor Ramosa2.1
5ly0_B6e-2661037104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022993658.11e-154LOB domain-containing protein 27-like
TrEMBLA0A0A0KXA11e-170A0A0A0KXA1_CUCSA; Uncharacterized protein
STRINGXP_004148705.11e-171(Cucumis sativus)
STRINGXP_004172833.11e-171(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-46LOB domain-containing protein 27