PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C021929P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 413aa MW: 47265.8 Da PI: 9.704 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.5 | 1.3e-14 | 23 | 109 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +l+ s++ + + l+lp +f++ + + s tl+ ++g +W+v l rk ++++++++GW++F + +++g +vF+++g+s f +v + MELO3C021929P1 23 KLVLSSTIQARKLRLPETFVRLIRDE--LSAVATLTVPDGHVWRVGL--RKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAF--CVFI 109 444566666677********988644..8889***************..**********************************9998..6655 PP | |||||||
2 | B3 | 61.8 | 1.2e-19 | 289 | 379 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ y+ + r l++GW eF+ +n+L egD++vF+l + +e l+v++f MELO3C021929P1 289 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTPDGRQWPVRCLYKVG--RAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMF 378 78899******************866743...5***************55555..566***********************98767776777777 PP - CS B3 98 r 98 r MELO3C021929P1 379 R 379 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-21 | 17 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-21 | 17 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.29E-17 | 19 | 111 | No hit | No description |
PROSITE profile | PS50863 | 13.084 | 20 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-13 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-11 | 24 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-24 | 278 | 379 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-24 | 281 | 380 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.88E-23 | 284 | 379 | No hit | No description |
SMART | SM01019 | 6.6E-20 | 286 | 381 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.874 | 286 | 381 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-18 | 289 | 379 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MTDFSAFRTG GFKRKMPRPH FHKLVLSSTI QARKLRLPET FVRLIRDELS AVATLTVPDG 60 HVWRVGLRKA DNKFWFEDGW QGFLEHYSIR VGYLLVFRYE GNSAFCVFIF NLNTSEINYQ 120 SAALSSNQRN NYSIQNRIFE EMEDYDIPEA IPSNQSMNSG SLRNKLFGDE WNLHQSKSAS 180 TLQAEYLSTR DIGVQFSAVE IKKSADEVRF QNLGDDAAHR VKKSGSKKRK IESSEHHPSA 240 HNSEDLGDIR FRFYESASAR KRTVTAEERE RAINSAKAFE PGNPFCRVVL RPSYLYRGCI 300 MYLPSCFAEK NLSGVSGFIK LQTPDGRQWP VRCLYKVGRA KLSQGWYEFC LENNLGEGDV 360 CVFELLRMRE IVLKVTMFRV IEEGGRMANP NPASMMNPPP LRSVSHIKLI RN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 4e-72 | 252 | 382 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-72 | 252 | 382 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681914 | 0.0 | LN681914.1 Cucumis melo genomic scaffold, anchoredscaffold00050. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459235.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 1e-138 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A1S3C9T8 | 0.0 | A0A1S3C9T8_CUCME; B3 domain-containing transcription factor VRN1-like | ||||
STRING | XP_008459235.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-141 | B3 family protein |
Publications ? help Back to Top | |||
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