PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021653P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 445aa    MW: 50504.1 Da    PI: 5.1203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021653P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12193236755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +Er+RR+++N+++ +Lr l+Pk +      K++Ka+iL  A++++k+Lq
  MELO3C021653P1 193 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 236
                     68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.853186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-12188240No hitNo description
SuperFamilySSF474593.27E-17190249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-16192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10193236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16193249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEQEAVVDSS NMETSFCVDV NAANGMQSKP FVADQNVVLR DPENQFEAPG SVTLTLENTN  60
VGYDISLDRI RLCNSPMNLQ RFNYSPENKN KNEIFTECSH DSFLIDKQGK PYKVSAENEL  120
EEVDTIHANT HGQFKENMIE YKEQQREEKD LVKHENGRSD SISDCSDRIE DEDDAIAKYR  180
RRTGQGPQSK NLVAERKRRK KLNERLYNLR ALVPKISKMD KASILGDAID FVKELQKQVK  240
ELRDELEEHS DDENGRTGLP GSNGNYNIVQ LPEFLSHNDK AQNSYHMGVL GSGSILKQNH  300
QDTEGTSNDK TQQMEPQVEV AQIDGNEFFI KVFCEKKRGG FVSLMEALNA LGLEVTNANV  360
TSYRGLVSNV FKVKKKDSEM VQADDVRDSL LEITKYPCRG WSDIIKAPEC IGSHMDYQPH  420
PHPHHHEHSF QDKAIDSRTH LLDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-131942561281Transcription factor MYC2
5gnj_B3e-131942561281Transcription factor MYC2
5gnj_E3e-131942561281Transcription factor MYC2
5gnj_F3e-131942561281Transcription factor MYC2
5gnj_G3e-131942561281Transcription factor MYC2
5gnj_I3e-131942561281Transcription factor MYC2
5gnj_M3e-131942561281Transcription factor MYC2
5gnj_N3e-131942561281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179200RRRTGQGPQSKNLVAERKRRKK
2194201ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902324.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
TrEMBLA0A1S4E2650.0A0A1S4E265_CUCME; transcription factor ABORTED MICROSPORES isoform X1
STRINGXP_008458897.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-60bHLH family protein