PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021587P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 328aa    MW: 36334.4 Da    PI: 5.8312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021587P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.71.9e-222812935128
             NAM  35 kevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgekt 119
                     ++ +i++++P++Lp  v+++ ++++fF+k++++yatg+rk+r+         ++ +W++tgk+k+++s +g ++g kk++ +y  ++  +k+ek+
  MELO3C021587P1  28 TDQGICYTHPENLP-GVSKDGNDVHFFHKTNNAYATGQRKRRKieseqsssLEHFRWHKTGKTKAMIS-NGVHKGWKKIFSLYrsSKGGSKPEKS 120
                     3447**********.6677889********************85666555444677***********9.999***********4423456778** PP

             NAM 120 dWvmheyrl 128
                     +Wv+h+y+l
  MELO3C021587P1 121 NWVIHQYHL 129
                     *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.7831148IPR003441NAC domain
SuperFamilySSF1019411.57E-2515148IPR003441NAC domain
PfamPF023651.1E-636129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDHLAAKCAV GNLKPHALID EFIPTLETDQ GICYTHPENL PGVSKDGNDV HFFHKTNNAY  60
ATGQRKRRKI ESEQSSSLEH FRWHKTGKTK AMISNGVHKG WKKIFSLYRS SKGGSKPEKS  120
NWVIHQYHLG TEEDEKEGEY VLSKISYQQP KQCIKNNDNM LIEYLDAMLH QTSPRTPKSN  180
PPVPPRSGKS LVSNAVADNS LPQSSAKEEE LTPEAFRVSY ANISSENDGG CHGWMAGESQ  240
DIADVELHYL EDNLLCNEVL DSSAFISSNQ VNQIPFPLSG SNAYHEIAND NVPCGIADLE  300
NLDLDTPPDF HLAVSSPPTF QVSNAFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458821.10.0PREDICTED: NAC domain-containing protein 10 isoform X2
TrEMBLA0A1S3C8R30.0A0A1S3C8R3_CUCME; NAC domain-containing protein 10 isoform X2
STRINGXP_008458820.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.12e-63NAC domain containing protein 85