PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C021534P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 28522.3 Da PI: 4.3079 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.3e-20 | 33 | 86 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le Fe+++++ e+++eLAkklgL+ rqV vWFqNrRa++k MELO3C021534P1 33 KKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWK 86 5679*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.5 | 1.4e-41 | 32 | 124 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv+lLE sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+ +++ + + ke+e+L++e+++ MELO3C021534P1 32 EKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVAS 124 69***********************************************************************************99999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-20 | 17 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.799 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-19 | 31 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-17 | 33 | 89 | No hit | No description |
Pfam | PF00046 | 3.4E-17 | 33 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 34 | 95 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.5E-17 | 88 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MMGMEETSKR RSFFSSPDDL FDDDYYDDQP PEKKRRLTQE QVHLLEISFE SENKLEPERK 60 TELAKKLGLQ PRQVAVWFQN RRARWKTKQL ERDYDLLKSS YDSFRSSYDF IAKENERLKA 120 EVASLTEKLQ AKEVVESSFH AKNPDPFLED QLLVPVVQQN IKIEDHHSCR SNGSAVLDED 180 GPQLLDSGDS YILSNDYDGC VLPAFGVNSE EEDGSDDGQG YFSDVYTTVD QQTHEGEPLT 240 WWDWTS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681890 | 0.0 | LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458752.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 3e-81 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1S3C9T9 | 0.0 | A0A1S3C9T9_CUCME; homeobox-leucine zipper protein HAT5-like | ||||
STRING | XP_008458752.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 8e-71 | homeobox 1 |
Publications ? help Back to Top | |||
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