PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C021427P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 451aa MW: 51925.7 Da PI: 6.3296

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C021427P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.1e-10	181	215	5	39
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 k rr+++NReAAr+sR+RKka++++Le+ +L+ MELO3C021427P1 181 KTLRRLAQNREAARKSRLRKKAYVQQLENSRIKLT 215 778*************************8444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0051	177	230	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.852	179	223	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-6	181	225	No hit	No description
Pfam	PF00170	1.3E-7	181	218	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-8	183	223	No hit	No description
PROSITE pattern	PS00036	0	184	199	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-28	256	331	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MESQRVEETC SVYGINNNNL SSTLINHDGQ SFDFGELEQA IVLQGLDAMN KLDHYEPKQS 60 FLSGKPAATL EMFPSWPIKY QQTSRGISLR KIEEMMRGSG NYNNSNNEEE DQMEILEKDH 120 EGEEESEMSN RSTPREQHEH SYNTSCFNII NNIQPHQVLM VSTDVSTTAL SSQHQYSLQQ 180 KTLRRLAQNR EAARKSRLRK KAYVQQLENS RIKLTQLEQQ FQQARSQVLN IKIIGSSAMW 240 FDMEYVRWLE EEHRHTMELR GGLEAHVSDT ELKVRVDACI YHYDQIFRLK GEAAKFDIFH 300 LITGMWMSPA ERCFLWIGGF RPSDLIKMLM SQLDPITEQQ VMEIYKLQNS SQQAEDALSQ 360 GLDQLHQSLT DTVAAGPIID GGINHMVLAM DKLSSLHGFL HQADILRQQT LHQLHRILTI 420 RQAAKCFLVI GEYYSRLRAL SSLWSSRLKE *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MESQRVEETC SVYGINNNNL SSTLINHDGQ SFDFGELEQA IVLQGLDAMN KLDHYEPKQS  60
FLSGKPAATL EMFPSWPIKY QQTSRGISLR KIEEMMRGSG NYNNSNNEEE DQMEILEKDH  120
EGEEESEMSN RSTPREQHEH SYNTSCFNII NNIQPHQVLM VSTDVSTTAL SSQHQYSLQQ  180
KTLRRLAQNR EAARKSRLRK KAYVQQLENS RIKLTQLEQQ FQQARSQVLN IKIIGSSAMW  240
FDMEYVRWLE EEHRHTMELR GGLEAHVSDT ELKVRVDACI YHYDQIFRLK GEAAKFDIFH  300
LITGMWMSPA ERCFLWIGGF RPSDLIKMLM SQLDPITEQQ VMEIYKLQNS SQQAEDALSQ  360
GLDQLHQSLT DTVAAGPIID GGINHMVLAM DKLSSLHGFL HQADILRQQT LHQLHRILTI  420
RQAAKCFLVI GEYYSRLRAL SSLWSSRLKE *

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	1e-160	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	1e-160	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008458585.1	0.0	PREDICTED: transcription factor TGA6-like isoform X2
Swissprot	Q93XM6	1e-148	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3C8S4	0.0	A0A1S3C8S4_CUCME; transcription factor TGA6-like isoform X2
STRING	XP_008458583.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-134	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]