PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021290P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 668aa    MW: 73958 Da    PI: 6.0145
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021290P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38e-29214267155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  MELO3C021290P1 214 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 267
                     79*******************.********************************8 PP
2Response_reg72.41.8e-24361441109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l++  y  v+ +  +e al +l+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a + ++ + + +  G
  MELO3C021290P1  36 VLVVDDDPTCLRILEKMLQNCCY-AVTKCNRAEIALSMLRENKngFDIVLSDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDGKNVVMKGVIHG 128
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l++
  MELO3C021290P1 129 ACDYLIKPVRIEALRN 144
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.3E-17116651IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.0E-4033177No hitNo description
SuperFamilySSF521722.28E-3433158IPR011006CheY-like superfamily
SMARTSM004483.1E-2734146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.335150IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.8E-2236144IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.96E-2537149No hitNo description
PROSITE profilePS5129411.048211270IPR017930Myb domain
SuperFamilySSF466893.58E-20211271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-30213272IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-25214267IPR006447Myb domain, plants
PfamPF002499.5E-8216266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MKGSIPTPTP TPTPTLISAR KATDMGSDQF PAGLRVLVVD DDPTCLRILE KMLQNCCYAV  60
TKCNRAEIAL SMLRENKNGF DIVLSDVHMP DMDGFKLLEQ VGLEMDLPVI MMSADDGKNV  120
VMKGVIHGAC DYLIKPVRIE ALRNIWQHVV RKRKTEWKDL EQSGSVDEGD REQNLSEGAN  180
YSSSAYEGSW NSSKRRRDAE EEPEERDDTS TLKKPRVVWS VELHQQFVAA VNQLGIDKAV  240
PKKILELMNV PGLTRENVAS HLQKYRLYLR RLSGVSPHQS NLNNSFINPQ DPPFGSMGSF  300
NGIDLQTLSV TGQLSPQSLA ALQATGLRRP TAKSSISMAL VDQNNIFSFE NPKLRFVEDQ  360
TQHLNNSKPV NLFHEIPTKI EPKQLGNIQH SSVQPQGNIN MQLNIKSEHS GTQLMHLSQQ  420
QTLGHSPASH LPRIPSTLRK PIISGSVTRG NGTTDNSHRP GYNLVSPTSV MVNYPMSQTT  480
ELSNNYSLQS NSSVSTLNCK GVFQEEISSD LKVSGGLMSS YDVFSDLPLQ KSHDWDSQNV  540
NTLAFGTFHH GNFMQDSFDI SPSTLIHHGF PSSQMNGQNQ NSSVVGKTMF SFSDLTQPEN  600
PQNIAQNSLL DPVEVKSQKI PDANYQTDLL SDDFGQDELL GVFLKQQQQG DDGSVDFSGY  660
QTENICV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22213273464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458388.10.0PREDICTED: two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ91e-176ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A1S3C7V40.0A0A1S3C7V4_CUCME; Two-component response regulator
STRINGXP_008458388.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39583458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-169response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]