PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C021288P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 140aa MW: 15071.1 Da PI: 10.2501 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.3e-19 | 29 | 63 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ MELO3C021288P2 29 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 63 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.0E-13 | 23 | 81 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.545 | 23 | 59 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-13 | 25 | 62 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-15 | 27 | 63 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.67E-13 | 28 | 63 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 29 | 54 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.1E-17 | 29 | 63 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 140 aa Download sequence Send to blast |
MMDPIEEGSE FKDAGKTSPM ESEQNKKTCA DCGTTKTPLW RGGPAGPKSL CNACGIRSRK 60 KRRSLLGLNR GGEVERKNKG SSNNRNNNGG GNQGKIGGES LKWRSMAFGR KELMQRTQLG 120 EEEQAAVLLM ALSYGSVYA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681924 | 1e-154 | LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047. | |||
GenBank | LN713265 | 1e-154 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458384.1 | 2e-97 | PREDICTED: GATA transcription factor 16-like isoform X1 | ||||
Swissprot | Q8LG10 | 3e-37 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A1S3C8C2 | 5e-96 | A0A1S3C8C2_CUCME; GATA transcription factor 16-like isoform X1 | ||||
STRING | XP_008458384.1 | 8e-97 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49300.1 | 7e-28 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|