PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C021288P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 121aa MW: 13019.8 Da PI: 10.7525 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.3 | 2.5e-19 | 10 | 44 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ MELO3C021288P1 10 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 44 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.0E-13 | 4 | 62 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.545 | 4 | 40 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-13 | 6 | 43 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.2E-16 | 8 | 44 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.21E-12 | 9 | 44 | No hit | No description |
Pfam | PF00320 | 3.1E-17 | 10 | 44 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 10 | 35 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MESEQNKKTC ADCGTTKTPL WRGGPAGPKS LCNACGIRSR KKRRSLLGLN RGGEVERKNK 60 GSSNNRNNNG GGNQGKIGGE SLKWRSMAFG RKELMQRTQL GEEEQAAVLL MALSYGSVYA 120 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681924 | 1e-154 | LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047. | |||
GenBank | LN713265 | 1e-154 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458384.1 | 6e-82 | PREDICTED: GATA transcription factor 16-like isoform X1 | ||||
Swissprot | Q8LG10 | 3e-37 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A1S3C8C2 | 1e-80 | A0A1S3C8C2_CUCME; GATA transcription factor 16-like isoform X1 | ||||
STRING | XP_008458384.1 | 2e-81 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 5e-28 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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