PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C021280P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CAMTA

Protein Properties

Length: 831aa MW: 93920.7 Da PI: 7.4534

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C021280P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	88.2	8.3e-28	6	66	58	118
CG-1 58 kkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +kk+dgktv+E+he+LKvg+ve +++yYah+ + ptf rrcywlL+++le+ivlvhy+e++ MELO3C021280P1 6 RKKRDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRRCYWLLDKTLEHIVLVHYRETQ 66 79********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	43.749	1	71	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-15	1	66	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.0E-21	6	64	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.1E-7	272	372	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.87E-16	283	370	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.3E-7	284	369	IPR002909	IPT domain
CDD	cd00102	0.00356	284	370	No hit	No description
CDD	cd00204	3.48E-16	445	579	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.9E-17	468	582	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.7E-7	469	549	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.77E-19	482	582	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.467	487	552	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.942	520	552	IPR002110	Ankyrin repeat
SMART	SM00248	9.7E-6	520	549	IPR002110	Ankyrin repeat
SMART	SM00248	3100	559	588	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.66E-5	628	734	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.595	631	660	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	64	683	705	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	684	711	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.028	706	728	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.633	707	731	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	709	728	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	10	784	806	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.846	786	814	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence Send to blast
MDIIGRKKRD GKTVKEAHEH LKVGNVERIH VYYAHGLDSP TFVRRCYWLL DKTLEHIVLV 60 HYRETQEMSP STSLNSNSGS VSNPPTPWLL SEELDSKAAH VYSIGENELS EPSDTTTVMT 120 HEQRLHEINT LEWDDLLVKD EPFKPAMPKG DKLSSFDQQN QVPINATSNF VGEMSSSSNP 180 VESTGMANGN ISFTGSANLL LRGQTNLNVE KRDSIAINSM DNLLDERLQS QDSFGRWINE 240 VIIESPGSVI DPAIEPSISS VHNSYRDSTL YHSQTLAMEQ IFNITEVSPA WALSTEKTKI 300 LIIGYFHNDF VHLAKSNLLV VCGDTSVNLD FVQPGVYRCL VPPHSPGLVH LYVSVDGHKP 360 ISQALNFEYR APNLEVPVVA SEQIQKWEEF QIQMRLAHML FSTSKILSMM STKLSPSALQ 420 EAKKLAIKTS DISDSWIYLL KSITENRTPF QQAREGVLEI MLRSRLREWL IERAAEGSKK 480 STEFDVNGQG VIHLCAILGY TWAVHLFDWA GLSINFRDKS GWTALHWAAY YGRERMVAVL 540 LSAGAKPNLV TDPSSKNPLG CTAADLASMN GYDGLAAYLS EKALVSHFKE MSLAGNVSGS 600 LDTGSTITDA SDCISEEQMY MKETLAAYRT AADAAARIQA AFREHSLKQR SDRIELSSPE 660 AEARSIIAAM KIQHAYRNFE TRKKMAAAAR IQYRFRTWKI RKDFLNMRRQ TIRIQAAFRG 720 FQVRRQYRKI VWSVGVLEKA ILRWRHKRKG FRGLQVAPTE VVEKQESDVE EDFYLVSQKQ 780 AEERVEKAVV RVQAMFRSKK AQEEYRRMRL AYDEAALEYE VLSHPVYGNH *

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence Send to blast

MDIIGRKKRD GKTVKEAHEH LKVGNVERIH VYYAHGLDSP TFVRRCYWLL DKTLEHIVLV  60
HYRETQEMSP STSLNSNSGS VSNPPTPWLL SEELDSKAAH VYSIGENELS EPSDTTTVMT  120
HEQRLHEINT LEWDDLLVKD EPFKPAMPKG DKLSSFDQQN QVPINATSNF VGEMSSSSNP  180
VESTGMANGN ISFTGSANLL LRGQTNLNVE KRDSIAINSM DNLLDERLQS QDSFGRWINE  240
VIIESPGSVI DPAIEPSISS VHNSYRDSTL YHSQTLAMEQ IFNITEVSPA WALSTEKTKI  300
LIIGYFHNDF VHLAKSNLLV VCGDTSVNLD FVQPGVYRCL VPPHSPGLVH LYVSVDGHKP  360
ISQALNFEYR APNLEVPVVA SEQIQKWEEF QIQMRLAHML FSTSKILSMM STKLSPSALQ  420
EAKKLAIKTS DISDSWIYLL KSITENRTPF QQAREGVLEI MLRSRLREWL IERAAEGSKK  480
STEFDVNGQG VIHLCAILGY TWAVHLFDWA GLSINFRDKS GWTALHWAAY YGRERMVAVL  540
LSAGAKPNLV TDPSSKNPLG CTAADLASMN GYDGLAAYLS EKALVSHFKE MSLAGNVSGS  600
LDTGSTITDA SDCISEEQMY MKETLAAYRT AADAAARIQA AFREHSLKQR SDRIELSSPE  660
AEARSIIAAM KIQHAYRNFE TRKKMAAAAR IQYRFRTWKI RKDFLNMRRQ TIRIQAAFRG  720
FQVRRQYRKI VWSVGVLEKA ILRWRHKRKG FRGLQVAPTE VVEKQESDVE EDFYLVSQKQ  780
AEERVEKAVV RVQAMFRSKK AQEEYRRMRL AYDEAALEYE VLSHPVYGNH *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	0.0	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008458373.1	0.0	PREDICTED: LOW QUALITY PROTEIN: calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1S3C8Z3	0.0	A0A1S3C8Z3_CUCME; LOW QUALITY PROTEIN: calmodulin-binding transcription activator 5
STRING	XP_008458373.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]