PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021146P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 755aa    MW: 81876.8 Da    PI: 6.2885
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021146P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.11.2e-1053907533374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++L++++e +++g+  laq +Larl+++ +sp g+p+qR+a+yf+eAL+  l++ +++ ++  +ps+ +    + ++aa+k fsevsP+l+f+++
  MELO3C021146P1 390 DQLFKAVELIETGNSVLAQGILARLNHQlSSPIGKPFQRAAFYFKEALQLLLQNPSNHPSSNPNPSPFT---IIFKIAAYKSFSEVSPVLQFANF 481
                     79************************998*************************999999999999998...*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     t Nqa+lea++g +r+HiiDfdi++G+QW++L+q+La R+    +gpp lRiT+++s +++++ el  t+e+L++fA+ l++ fe +v+ ++ l+
  MELO3C021146P1 482 TSNQALLEAFNGFDRIHIIDFDIGYGGQWASLMQELALRSnttgGGPPFLRITAFASTSTHDNFELGFTQENLKNFANDLNIGFELEVVNVECLN 576
                     ****************************************999889*************9****************************8555554 PP

            GRAS 188 dl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +   +  L+v+++Ea+aVnl +   ++++ s+sl+     +L++vk+l+Pk+vv v++ +++ +++F +r+++al+ ysal++s+ea    + ++
  MELO3C021146P1 577 SGsWPLPLNVSENEAIAVNLPV--GSFFNYSLSLPM----ILRFVKHLNPKIVVSVDRGCSRMDAPFPHRVINALHSYSALLESMEAV-TVNMDT 664
                     442355689999*********9..566666899988....*********************************************776.46789* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + k+Er l+++ i++vv++ +++    +e+++ W++ + ++GF p+++s+++++qa++ll++++++g+++++++ slvl+W++++Lvs+SaWr
  MELO3C021146P1 665 QLKIERYLVQPCIEKVVTNPQSS----NERAAPWKSVFLSSGFCPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWR 753
                     ********************999....99999************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.917362733IPR005202Transcription factor GRAS
PfamPF035144.1E-103390753IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MKAMPLPFPF DELRPNGVLN FTSVSDSSPS QPPTSTTLLR RHNHWSCTDN TNLLKEICYV  60
GAAEPTSVLD TRRSPSPPTS TSTLSSSLGG GGGGGGGTAS TDTTVAAPPS SLPENPSPLD  120
KCGGGGSLGI DDWESVLPES PSQGPSILGL IMGDVEDPSL GLNKLLQSGG GGGSGGGDSH  180
LDLEFSAGFS AVDHGLVFEP NSLAGESIVD PSLQGSSCSD FPNARLAAAV SNSNAIFSGM  240
FQNQNQMVEG VDEKPQIFSS SQVVMNQNQT QFTQNPALFM PLPYASPVQD HHQNHHHHHL  300
LGGAPPAKRF NSGSIGPNYP VKSPFLDSGQ ENFSRRQQQQ QPHQVQLFPH HSHHHNVPQQ  360
QQRPSMAALA KQKMVNEDIA NQQLQQGISD QLFKAVELIE TGNSVLAQGI LARLNHQLSS  420
PIGKPFQRAA FYFKEALQLL LQNPSNHPSS NPNPSPFTII FKIAAYKSFS EVSPVLQFAN  480
FTSNQALLEA FNGFDRIHII DFDIGYGGQW ASLMQELALR SNTTGGGPPF LRITAFASTS  540
THDNFELGFT QENLKNFAND LNIGFELEVV NVECLNSGSW PLPLNVSENE AIAVNLPVGS  600
FFNYSLSLPM ILRFVKHLNP KIVVSVDRGC SRMDAPFPHR VINALHSYSA LLESMEAVTV  660
NMDTQLKIER YLVQPCIEKV VTNPQSSNER AAPWKSVFLS SGFCPLTFSN FTESQAECLL  720
QRTPVQGFHI DKRHSSLVLC WHRKELVSIS AWRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-3541775246377Protein SCARECROW
5b3h_D4e-3541775246377Protein SCARECROW
5hyz_A3e-3542375337375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458131.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6
TrEMBLA0A1S3C7R00.0A0A1S3C7R0_CUCME; LOW QUALITY PROTEIN: scarecrow-like protein 6
STRINGXP_008458131.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-147GRAS family protein