PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020967P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 249aa    MW: 28583.9 Da    PI: 9.8975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020967P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.6e-32171229159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  MELO3C020967P1 171 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHS 229
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-33156229IPR003657WRKY domain
SuperFamilySSF1182906.02E-28163230IPR003657WRKY domain
PROSITE profilePS5081129.126166231IPR003657WRKY domain
SMARTSM007742.7E-35171230IPR003657WRKY domain
PfamPF031061.7E-24172228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGSKSQVLLN PQALLEDHQE VTPNSQMGFF NFPSNLTFFQ LPSIPQTHSP SPSFDPPNFS  60
TSNNNTNNNN NNNSNNLSET LLSSSILPLK SSISYEIAPQ HLLSLQTSTP NLWPWGEIGE  120
RLLMNGKRSN NNENNNNQLG VSKMKMKKMK GRRKVREPRF SFKTMSDVDV LDDGYKWRKY  180
GQKVVKNTQH PRSYYRCTQD HCRVKKRVER LAEDPRMVIT TYEGRHVHSP SHDSEDSEAQ  240
THLNNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-26163228974Probable WRKY transcription factor 4
2lex_A5e-26163228974Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840380.0GU984038.1 Cucumis sativus WRKY protein (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457912.10.0PREDICTED: probable WRKY transcription factor 13 isoform X1
TrEMBLA0A1S3C6R70.0A0A1S3C6R7_CUCME; probable WRKY transcription factor 13 isoform X1
STRINGXP_008457912.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.18e-54WRKY DNA-binding protein 13