PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020922P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 306aa    MW: 35422.7 Da    PI: 9.7953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020922P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.5e-1827122299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fkv    d+lk++ l +p+kf++e+g++   + ++ l+ ++g++W+v l+ ++++ r+++  GW++ v+   +k+g f+vFk+++ ++ +l+v +
  MELO3C020922P1  27 FKVV-LDDALKEQKLEIPRKFVREYGLQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSVKSGYFLVFKYEN-QSSSLYVVI 119
                     4544.478999999**************99999****************999999****************************87.555579999 PP

                     E-S CS
              B3  97 frk 99 
                     f++
  MELO3C020922P1 120 FDR 122
                     997 PP
2B358.51.2e-18205298495
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     +  ps+ ++++ l++pk+fa+ h ++  ++++++l+ ++gr W+  + +     k +++++++ GWk+F ++n L +gDf+vF+++g+++++  +
  MELO3C020922P1 205 KVWPSHIHRTKSLSIPKSFADMHVED--STTKIILKASDGRMWSGGCGFywtpYKMQRMTYFKYGWKSFIRDNYLTVGDFCVFEMTGKNCTTISF 297
                     5669999999**********999655..5679*************99555777677777*************************99887776655 PP

                     E CS
              B3  95 k 95 
                     k
  MELO3C020922P1 298 K 298
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1822122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-2022123IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-2124121No hitNo description
PROSITE profilePS5086312.81625123IPR003340B3 DNA binding domain
SMARTSM010193.9E-1526123IPR003340B3 DNA binding domain
PfamPF023623.7E-1627122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-21198304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-20199295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.887202305IPR003340B3 DNA binding domain
SMARTSM010196.9E-8203305IPR003340B3 DNA binding domain
PfamPF023622.1E-16206298IPR003340B3 DNA binding domain
CDDcd100171.09E-17208302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MASSSHHQPN SIVKQPDKAL LHNPHFFKVV LDDALKEQKL EIPRKFVREY GLQALLKDQV  60
CLKVRDGKEW NVGLTKSNNG TRVWFHYGWE KLVEFYSVKS GYFLVFKYEN QSSSLYVVIF  120
DRTATEIEYP VKKISLDKSK ERVKMETYFD DDLDLDFKDG DLSFGVKKPT NSRWKPPSTG  180
SQQARAMAKA NRFQSMTLNP SFICKVWPSH IHRTKSLSIP KSFADMHVED STTKIILKAS  240
DGRMWSGGCG FYWTPYKMQR MTYFKYGWKS FIRDNYLTVG DFCVFEMTGK NCTTISFKVE  300
IFTAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457959.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A1S3C7C60.0A0A1S3C7C6_CUCME; putative B3 domain-containing protein Os03g0621600 isoform X2
STRINGXP_008457959.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-19B3 family protein