PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020914P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 338aa    MW: 39569.4 Da    PI: 8.5405
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020914P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.7e-124801899
                    --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    lp+kf++++g  +     + l  ++g +W+++l   k +g++ + +GW eFvk   ++ g f+vF+l+g  +f  +v +f++
  MELO3C020914P1  4 LPNKFVKNNGD-SLLFNHVALSLPDGAKWNFQL--MKLDGKFCFLRGWPEFVKFYSIQPGYFLVFQLKGICCF--NVLIFDT 80
                    8*****77754.46677899999**********..99999999999*********************999999..9999987 PP
2B364.61.5e-20235332198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     f  ++ ps+  + ++l+lp+ f e++  k  es++++le  +gr W+v +  ++  +++r+ l++GWk+F+ +n+L+egD++vF+l+++  + ++
  MELO3C020914P1 235 FMVTMRPSYIQTGNCLSLPRIFSERYI-K--ESMDVKLEVGDGRIWKVWCgvRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELINKtPKVHF 326
                     778999******************994.3..689**************98667778888899*************************88799999 PP

                     EEEEE- CS
              B3  93 vvkvfr 98 
                     +v++fr
  MELO3C020914P1 327 HVTIFR 332
                     999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0024181IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-13381IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-9480IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-14481IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-12479No hitNo description
Gene3DG3DSA:2.40.330.102.5E-23229332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-22230334IPR015300DNA-binding pseudobarrel domain
CDDcd100177.95E-23233332No hitNo description
PfamPF023622.2E-18235332IPR003340B3 DNA binding domain
SMARTSM010198.3E-13235334IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38235334IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQDLPNKFVK NNGDSLLFNH VALSLPDGAK WNFQLMKLDG KFCFLRGWPE FVKFYSIQPG  60
YFLVFQLKGI CCFNVLIFDT SATEIDYPMR RPPVLIPKSE SEDEEESIHI LHEAALKKRK  120
RMEKKEKETS AYCSLRKMKK NMEIKIMKHR EFTTPQVFSD EDEDEDEDED LETNYSPRQT  180
NYRGSAYNES EDGRSSPESM RPMNPRKAPQ VLTENQLVVL RRASSFKCRT KNPSFMVTMR  240
PSYIQTGNCL SLPRIFSERY IKESMDVKLE VGDGRIWKVW CGVRWAFTRR RTELKGGWKR  300
FAVDNELEEG DICVFELINK TPKVHFHVTI FRLPNPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119126KRMEKKEK
2119127KRMEKKEKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457851.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S3C6140.0A0A1S3C614_CUCME; B3 domain-containing transcription factor VRN1-like
STRINGXP_008457851.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein