PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C020871P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21083.3 Da PI: 8.482 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70 | 2.1e-22 | 18 | 61 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ks+rqvtfskRr+g++ KA ELS+L +ae+a+++fsstgk+y++ MELO3C020871P1 18 KSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYTF 61 89*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.1E-29 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.553 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.47E-33 | 6 | 77 | No hit | No description |
SuperFamily | SSF55455 | 6.8E-25 | 6 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-21 | 18 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MKKSSGRQKI EIKKLNVKSR RQVTFSKRRA GLFNKAAELS ILSGAEIAIL VFSSTGKIYT 60 FGHPNVDMLI DRFLTSNFVP TKPAEAYLPL EELNRDLKDA TAEFEIEKMR AERMRNTGGF 120 WWDETEMECM GIEELKRFRS SLMELRGKVA EKVEELAAVN QEVLITSPSF HHHATTIEDL 180 GLGFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 1e-14 | 7 | 70 | 18 | 81 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 1e-14 | 7 | 70 | 18 | 81 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 0.0 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457781.1 | 1e-135 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S3C5V9 | 1e-133 | A0A1S3C5V9_CUCME; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_008457781.1 | 1e-134 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-34 | AGAMOUS-like 62 |