PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C020818P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bZIP | ||||||||
Protein Properties | Length: 273aa MW: 29969.4 Da PI: 5.4169 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.2 | 1e-09 | 89 | 135 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k+ +r NReA r++R++Kka+ + Le++v L a N++L k+l+ MELO3C020818P1 89 KNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQG 135 8899999***********************************99974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-13 | 82 | 153 | No hit | No description |
SMART | SM00338 | 2.9E-10 | 85 | 152 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 6.6E-15 | 87 | 142 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.232 | 87 | 134 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.48E-7 | 89 | 135 | No hit | No description |
CDD | cd14686 | 3.19E-12 | 91 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MEDGELESSN PEVFSGSNAV ELPSSCSMDS FFDEILKDTH ACTHAHTCNP PGPDYSHTHT 60 CFHVHTKIVS SPTEEKLSTD DTEDSVDKKN KKRPLGNREA VRKYREKKKA RAASLEDEVV 120 RLRALNQQLL KRLQGQAALE AEVSRLKCLL VDIRGRIEGE IGSFPYQKPA NSNPPNQNVS 180 GSYMINPCNV ECNDQAYCLR PGDDGKSGES TLLNGQSFSA CDFENLQCLA NQNTGAKEPP 240 DCGLGNTIAN VNCAELNPKK GVYERLYPSY VL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 0.0 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457698.1 | 0.0 | PREDICTED: basic leucine zipper 23 isoform X2 | ||||
Swissprot | Q8VY76 | 1e-107 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | A0A1S3C634 | 0.0 | A0A1S3C634_CUCME; basic leucine zipper 23 isoform X2 | ||||
STRING | XP_008457697.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35040.1 | 4e-96 | bZIP family protein |
Publications ? help Back to Top | |||
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