PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C020620P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 665aa MW: 73655.5 Da PI: 8.5364 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 565 | 614 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ MELO3C020620P2 565 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 614 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.53E-7 | 368 | 454 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.374 | 374 | 444 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.565 | 560 | 619 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 564 | 617 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-10 | 565 | 615 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-15 | 566 | 647 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.19E-16 | 566 | 616 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MGSMATKCQP SLELLDQPGS LCRKGTEGSQ MRAFDLLATV ADKLLHGTDG PTTTTTDTST 60 ENDRHAVMNK ELDANSLLKV EPSDRGSCDQ GLVLETVLSG HNKNCDRNDS LPQHDEHSPQ 120 LVPIVTNFEK CKKEMENLAS EVHLGSPSSK ESDNCELDRK HKVTVKYELH KTEEVLTGAQ 180 NQDDSCKRED PVIWDQKARL LVNNSDSCGK MTQDKNIVLN SSFTTQNNVK VVDRDDDENS 240 SGCTHPVSSI KSFRTLPSSR DRRIRKVSAS KSWKVVPRYR DESLSKSDGS WKSMFRSKSS 300 HDSCRRQKSQ MNIPFKKRKF FDCTSSVSNS DGGINSEGLS DSTGKVINTD NSGRSCSASG 360 HGHQKSFPSK DSHVKIRIKS FRVPELFIEI AETATVGSLK RTVMEAVTAI LGGGLRVGVL 420 LQGKKIRDDS KTLFQTGISH DNQLDSLGFA LEPNPSRTSL ALSQEDSPCI LLHDAPEPLT 480 RYSRNASADN PGSSTVLSDP HGDSLGNFIE SDHDSAPSPT DTSNHKSSTD SKALVTVPEM 540 TVEALNVVPM HRKSKRSEVA QRRIRRPFSV AEVEALVQAV EKLGTGRWRD VKLRAFDNAK 600 HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLT AHAYWSKQQA KYQLKRQPET 660 CLLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 8e-57 | 549 | 651 | 1 | 103 | Telomere binding protein TBP1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681926 | 0.0 | LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457466.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Refseq | XP_008457467.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
TrEMBL | A0A1S3C557 | 0.0 | A0A1S3C557_CUCME; telomere repeat-binding protein 5-like | ||||
STRING | XP_008457466.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53790.1 | 8e-51 | TRF-like 4 |