PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020620P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 675aa    MW: 75110.2 Da    PI: 9.4172
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020620P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07575624147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   MELO3C020620P1 575 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 624
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.53E-7378464IPR029071Ubiquitin-related domain
PROSITE profilePS500539.374384454IPR000626Ubiquitin domain
PROSITE profilePS5129415.565570629IPR017930Myb domain
SMARTSM007172.0E-7574627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10575625IPR009057Homeodomain-like
SuperFamilySSF466891.11E-15576657IPR009057Homeodomain-like
CDDcd116601.82E-16576626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MVLQKRLDYG FHGYQVPTKP RATRSARKRS LCRKGTEGSQ MRAFDLLATV ADKLLHGTDG  60
PTTTTTDTST ENDRHAVMNK ELDANSLLKV EPSDRGSCDQ GLVLETVLSG HNKNCDRNDS  120
LPQHDEHSPQ LVPIVTNFEK CKKEMENLAS EVHLGSPSSK ESDNCELDRK HKVTVKYELH  180
KTEEVLTGAQ NQDDSCKRED PVIWDQKARL LVNNSDSCGK MTQDKNIVLN SSFTTQNNVK  240
VVDRDDDENS SGCTHPVSSI KSFRTLPSSR DRRIRKVSAS KSWKVVPRYR DESLSKSDGS  300
WKSMFRSKSS HDSCRRQKSQ MNIPFKKRKF FDCTSSVSNS DGGINSEGLS DSTGKVINTD  360
NSGRSCSASG HGHQKSFPSK DSHVKIRIKS FRVPELFIEI AETATVGSLK RTVMEAVTAI  420
LGGGLRVGVL LQGKKIRDDS KTLFQTGISH DNQLDSLGFA LEPNPSRTSL ALSQEDSPCI  480
LLHDAPEPLT RYSRNASADN PGSSTVLSDP HGDSLGNFIE SDHDSAPSPT DTSNHKSSTD  540
SKALVTVPEM TVEALNVVPM HRKSKRSEVA QRRIRRPFSV AEVEALVQAV EKLGTGRWRD  600
VKLRAFDNAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLT AHAYWSKQQA  660
KYQLKRQPET CLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-565596611103Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457466.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_008457467.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A1S3C5570.0A0A1S3C557_CUCME; telomere repeat-binding protein 5-like
STRINGXP_008457466.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.15e-38TRF-like 4