PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020417P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 307aa    MW: 34450.6 Da    PI: 6.2424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020417P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.42.9e-14115161354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  MELO3C020417P1 115 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 161
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11115161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-15116169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-13118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-5125164No hitNo description
Gene3DG3DSA:3.30.70.2601.9E-5199251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKEEGDCFED QIVMQQNGNV FVAGGGGSDF SEVSPLMFPS HQVPGFNPFL FNPTTLDQHD  60
PFNPSPPQLP SFFNRRNNNI SFPYYDNNNV GCAPFELTKM TAQEIMDAKA LAASKSHSEA  120
ERRRRERINN HLAKLRSLLP NTTKTDKASL LAEVIQHVKE LKRQTMLIAD ASLLPTEVDE  180
LSVDVDASDE DGKFVIKASF CCEDRSDLLP QITKTLKSLH LRTLKAEITT FGGRVRNVLF  240
ITADNDSSND QQQDHNPQHQ YSISSIQEAL KGMMEKVCRE EQSSGSIKRQ RTNNHNNINI  300
IQNRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818450.0LN681845.1 Cucumis melo genomic scaffold, anchoredscaffold00043.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457214.10.0PREDICTED: transcription factor bHLH30-like
RefseqXP_008457215.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-81BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1S3C4K30.0A0A1S3C4K3_CUCME; transcription factor bHLH30-like
STRINGXP_008457214.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]