PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020370P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 285aa    MW: 31305 Da    PI: 6.1806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020370P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1363109354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h + Er+RR ++N+++  Lr+l+P +     +K++ a+i+  A++YI++L
  MELO3C020370P1  63 TKHFATERQRRVQLNDKYKALRSLVPIP-----TKNDRASIVGDAINYIQEL 109
                     78**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.08560109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.52E-1561124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-1161114No hitNo description
Gene3DG3DSA:4.10.280.102.6E-1263122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1163109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1066115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDTACRRPVP EGEGGESLFP EGSEIVEREG TAGVYEDGDG SGVLEFSRDM ADCIGKRRDG  60
KMTKHFATER QRRVQLNDKY KALRSLVPIP TKNDRASIVG DAINYIQELL REVKELKLLV  120
EKKRSSRERS KRVRTAEEIE QGGGGGGGGG GGGSGGGAWD VESSNAKGGE GVVEDQRYNL  180
RSSWLQRKTK DTEVDVRIVD DEVTVKLVQR KLNCLLLVSK LLEDLQLDLH HVAGGHIGDY  240
YSFLFNTKIY EGSSVYASAI ANKVMEAVDR QYNNTSISPL TNTY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818450.0LN681845.1 Cucumis melo genomic scaffold, anchoredscaffold00043.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649069.11e-180PREDICTED: transcription factor bHLH91-like
SwissprotQ8GX469e-69BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A0A0LI111e-178A0A0A0LI11_CUCSA; Uncharacterized protein
STRINGXP_004139000.11e-178(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.26e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]