PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C020321P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 681aa MW: 76001.6 Da PI: 6.6655 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.4e-19 | 28 | 83 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++++q+++Le++F+++++p++++r++L+++lgL+++q+k+WFqN+R++ k MELO3C020321P1 28 KKTYHRHNPYQIQQLESFFRQCPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTK 83 688999**********************************************9987 PP | |||||||
2 | START | 135.3 | 6.4e-43 | 230 | 447 | 6 | 206 |
HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ++el+++ +ep+W+k + +d + + ++e ++asgvv+m + +lv +ld +W + aet MELO3C020321P1 230 GLEELIRLLRIDEPLWMKTLndgrYVLHRDSYEK------IfprpnhfktssARTESSKASGVVTMSAIQLVDCFLDAD-KWADLFStiitNAET 317 57899***************54444444555555......4455555999999**************************.77777777777**** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 i++g galqlm++++ splv+ Rdf f+R+++q + g+wvivdvS + ++ + ++R+ +lpSg+li++++ng skvtwveh MELO3C020321P1 318 FHIIDPGmpgnrsGALQLMYQQMHIFSPLVSpRDFCFLRHCQQIEFGVWVIVDVSYEILKDCVT---SARCWRLPSGCLIQEMPNGCSKVTWVEH 409 ****************************9999************************98888775...8*************************** PP EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 v++++++ h l+r lv ++la ga +w+ tlqr ce+ MELO3C020321P1 410 VEVDDKTQtHRLYRDLVFNTLAYGADRWLFTLQRMCER 447 *****9998***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 13 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.09E-19 | 13 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.714 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-16 | 27 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.87E-17 | 28 | 86 | No hit | No description |
Pfam | PF00046 | 6.8E-17 | 28 | 83 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.397 | 216 | 450 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.03E-31 | 219 | 449 | No hit | No description |
CDD | cd08875 | 3.44E-105 | 221 | 446 | No hit | No description |
SMART | SM00234 | 3.0E-29 | 225 | 447 | IPR002913 | START domain |
Pfam | PF01852 | 1.0E-35 | 230 | 447 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.8E-11 | 270 | 411 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.03E-8 | 468 | 614 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 681 aa Download sequence Send to blast |
MDIMMDGRGG YGGGSPDEQE GSNDRKGKKT YHRHNPYQIQ QLESFFRQCP HPDENQRRQL 60 SRELGLETKQ IKFWFQNKRT QTKAQNERAD NSSLRTENEK IQCENLAIRE ALRNVICPSC 120 GGPPFGEEER QRNLQKLRLE NSHLKEEHEK VSNLLAKYIG KPISQLESLL PVLGSSLDLS 180 PRSSLTQIVP SPAVDLISDP VILDGAATTY QSRGINDLEN ALMLETAATG LEELIRLLRI 240 DEPLWMKTLN DGRYVLHRDS YEKIFPRPNH FKTSSARTES SKASGVVTMS AIQLVDCFLD 300 ADKWADLFST IITNAETFHI IDPGMPGNRS GALQLMYQQM HIFSPLVSPR DFCFLRHCQQ 360 IEFGVWVIVD VSYEILKDCV TSARCWRLPS GCLIQEMPNG CSKVTWVEHV EVDDKTQTHR 420 LYRDLVFNTL AYGADRWLFT LQRMCERLAY TFRDCAPNHE LGGVLTSPEG RRSIMKLSHR 480 MVKNFCGILS MSGKLDFPQL SEVNNSGVRI SVRISSELGQ PSGTVVSAAT SLWLPLQPET 540 IFNFFRDEKA RVQPFIPTEN NMLILQESCI DPLGSLVIYA PIDMPAMNIA TSGQDPSEIP 600 ILPSGFVITG DGRTHSGIGA STSSTLGRPS GSLLTIAFQI LVSSVSSSKQ LNVESVATVN 660 TLISATVQRI KVALNCSCLD * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681854 | 0.0 | LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457114.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X2 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A1S3C625 | 0.0 | A0A1S3C625_CUCME; homeobox-leucine zipper protein HDG11-like isoform X2 | ||||
STRING | XP_008457113.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |