PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C020145P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 345aa MW: 38176.6 Da PI: 6.5163

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C020145P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.1	1e-09	142	194	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ++ MELO3C020145P1 142 KRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTT 194 9*****************************************99988876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-15	138	202	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	140	203	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.86E-10	142	193	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-9	142	196	No hit	No description
Pfam	PF00170	1.6E-8	142	196	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.33E-25	143	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MELPNPTNQM ASSSNPTPPF RGSFHRRAHS EVHFRIPDDL DLVSDPFDAP SSGFEDLGFE 60 DDLLCTFMDI EKIGSKIENG SSSNPAMAAG GTGGVNVEGE KISRPRHRHS NSADGSSILE 120 SIEAKKAMDP DKLAELWTID PKRAKRILAN RQSAARSKER KARYIMELER KVQSLQTEAT 180 TLSAQLTLYQ RDTTGLSTEN SELKLRLQAM EQQAHLRDAL NEALKKEVER LKIATGEVMT 240 ATDSYNFGMP QVSYPQSCFS HQPQPGQHNP QRMTTQRPQV QPFHSNLPNP HQALFVASHQ 300 PHALTEMFQQ DPITRLQGLD IGSRGTEIKP EGSSISVSES SSTF*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MELPNPTNQM ASSSNPTPPF RGSFHRRAHS EVHFRIPDDL DLVSDPFDAP SSGFEDLGFE  60
DDLLCTFMDI EKIGSKIENG SSSNPAMAAG GTGGVNVEGE KISRPRHRHS NSADGSSILE  120
SIEAKKAMDP DKLAELWTID PKRAKRILAN RQSAARSKER KARYIMELER KVQSLQTEAT  180
TLSAQLTLYQ RDTTGLSTEN SELKLRLQAM EQQAHLRDAL NEALKKEVER LKIATGEVMT  240
ATDSYNFGMP QVSYPQSCFS HQPQPGQHNP QRMTTQRPQV QPFHSNLPNP HQALFVASHQ  300
PHALTEMFQQ DPITRLQGLD IGSRGTEIKP EGSSISVSES SSTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681900	0.0	LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456950.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-117	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1S3C4G5	0.0	A0A1S3C4G5_CUCME; transcription factor RF2b
STRING	XP_008456950.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-116	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]