PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C020121P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26813.1 Da PI: 8.496 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.8 | 1.4e-41 | 49 | 148 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ael+ MELO3C020121P1 49 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQSLQAELN 143 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e MELO3C020121P1 144 AVRAE 148 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.775 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-42 | 49 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSKERERFDE IAKKIKRETD VSSNIPPQQI MGRRHSLQGS PGALNTITPC AACKLLRRRC 60 AQECPFSPYF SPHEPHKFAS VHKVFGASNV SKMLMEVSEN QRADAANSLV YEANVRLRDP 120 VYGCMGAISA LQHQIQSLQA ELNAVRAEIL RHKFREANNM IHSSPQQQHV PFLSSSSSTE 180 VVSVALPPPP PPLPPPHHHD ASSSSSSLYN RPTVAAAADY STISSDENVT YFVSTSSSGH 240 QLNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-44 | 40 | 165 | 5 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-44 | 40 | 165 | 5 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681900 | 0.0 | LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456927.1 | 0.0 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 6e-81 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1S3C502 | 1e-179 | A0A1S3C502_CUCME; LOB domain-containing protein 15 | ||||
STRING | XP_008456927.1 | 1e-180 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-83 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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