PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019995P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 23851.1 Da PI: 9.0138 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.7 | 1.3e-40 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv k+l ++pe++r da++slvyeA+ r+rdPvyG++g i++lq+ql++l+++l+ MELO3C019995P1 32 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLHTLQSDLN 126 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ MELO3C019995P1 127 AITTQ 131 98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.331 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-41 | 32 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGRRNNNSNN LILSSSSSSQ SSGISNLNTI TPCAACKLLR RRCAQECPFS PYFSPHEPHK 60 FASVHKVFGA SNVAKMLMEV PENQRADAAN SLVYEANLRL RDPVYGCMGA ISALQHQLHT 120 LQSDLNAITT QIFKYKFTHH PINIPSSPNF ISPSPAATPP AAPPTPPHSQ PPPLSLPPPL 180 PPSSSSSSVF SPPIITTATS TTVVELINPI VSTSTQHISY FG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 32 | 135 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 32 | 135 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681821 | 0.0 | LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456762.1 | 1e-159 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 3e-65 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A1S3C3L1 | 1e-157 | A0A1S3C3L1_CUCME; LOB domain-containing protein 15-like | ||||
STRING | XP_008456762.1 | 1e-158 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 6e-64 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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