PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019801P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 707aa    MW: 77949.7 Da    PI: 7.1786
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019801P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17.1e-23122223199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        ++    +t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  MELO3C019801P1 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVEP--PVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 212
                     89****************************974333..3459************************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+++v+r+
  MELO3C019801P1 213 TGDLCIGVRRA 223
                     9999****996 PP
2Auxin_resp104.71.1e-34281364183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa  a+++++Fe+vY+P a+t+eFvvk++++++a+++++   mRfkm fetedss++++ +Gt+++++++dp+rWp+S+Wr+L+
  MELO3C019801P1 281 AAMLAASGQPFEIVYYPCAGTPEFVVKASSIRSAMQIHWYSAMRFKMPFETEDSSRISWfMGTISSIQAADPIRWPDSPWRMLQ 364
                     577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-30106224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-35114225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-20121222No hitNo description
SMARTSM010198.6E-21122224IPR003340B3 DNA binding domain
PfamPF023629.6E-21122223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731122224IPR003340B3 DNA binding domain
PfamPF065071.3E-29281364IPR010525Auxin response factor
PROSITE profilePS5174512.631608688IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MNRGVDAVID PMMNHDKHLD SQLWHACAGG LIQLPTINSK VVYFPQGHAE HAQGNVDFGN  60
ARIPSIIPCR VSAIRHMADP ETDEVFAKIK LSPLGNNDFS LDNDDDFLGH SEIKSQDKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSVEPPVQ TILAKDVHGE IWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AETGDLCIGV RRAKRGIGCG IDYSPGWNPT  240
NSGSSLVGYS DYMRESEGRL GRRNTNGNLS GRVKVESVIE AAMLAASGQP FEIVYYPCAG  300
TPEFVVKASS IRSAMQIHWY SAMRFKMPFE TEDSSRISWF MGTISSIQAA DPIRWPDSPW  360
RMLQVTWDEP DLLQNVKSVN PWLVEVVVNM PAIHVSPFSP PRKKPRFPLQ ADTSGFGHLP  420
MPSFSTNMFD TTNPLQSITA NKIPAGIQGA RHTQFGLSSP NLQISKLLPG QFSPGLKHLD  480
DATPLPGIRG EDIFGGMKNP DICSHWLTVG NHIQSSKESS KEESSKESKE TKPAHIILFG  540
QLIFPNQQNS NSCSGDTMNA SDANQEKASN VSDGSGFSSQ QNGSLENSSE GGSTSYNGQD  600
KSGLSLDTGH CKVFMELENV GCNLDLSALR SYEELYRKLG NMVGLRSSEM LNSVLYQDRL  660
GATKLVGEEP FSEFLKKAQK LTITTDSRSR DNIDSRSRDK IRHIRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-741938551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8433440.0KC843344.1 Cucumis sativus auxin response factor 10c (ARF10c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456485.10.0PREDICTED: auxin response factor 16-like
RefseqXP_008456486.10.0PREDICTED: auxin response factor 16-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3C4190.0A0A1S3C419_CUCME; Auxin response factor
STRINGXP_008456485.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2468333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]