PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019745P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 300aa    MW: 32647.2 Da    PI: 8.6283
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019745P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.42.6e-3423101266
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 
                     +++kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +              +
  MELO3C019745P1  23 TARKDRHSKVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLSANlppcnttapssvpvE 101
                     789************************************************************9888864332222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-312389IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7392583IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGINTIAGQI LHVPGGGLVV RSTARKDRHS KVYTSRGLRD RRVRLSAHTA IQFYDVQDRL  60
GYDRPSKAVD WLIKKAKSAI DKLSANLPPC NTTAPSSVPV ETETNGIDVV VDRSECCKNH  120
DFLFQSQFSE NLIPPPPPPP VESGVGFRSC RNLGLSLQTQ NSPHNVHHQT VFYTANSGNS  180
GPGFDDGFEK IVAWNTNVFG SIPIVNQSST AFPQRGPLQS SLESTVPHYT WNDLSIVSAG  240
KRHPNPIQEN PSPSIPRFIS NELPHLDVHG RFQNDGDGDD DGNGNGGKAS SRSSSYSRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-233083154Putative transcription factor PCF6
5zkt_B6e-233083154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456416.20.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1S3C3A00.0A0A1S3C3A0_CUCME; transcription factor TCP4-like
STRINGXP_008456416.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-37TCP domain protein 10