PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C019736P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 254aa MW: 27914.2 Da PI: 10.5435

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C019736P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.2e-07	27	51	7	30
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 Er+RR+++N++++ Lr+++P+ + MELO3C019736P1 27 LSERNRRRKLNERLFALRSVVPNiS 51 57********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.39E-5	18	56	No hit	No description
PROSITE profile	PS50888	10.036	20	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-8	20	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-6	26	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-5	27	51	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF101278	4.05E-32	49	190	IPR013992	Adenylate cyclase-associated CAP, N-terminal
Pfam	PF01213	4.5E-34	51	224	IPR013992	Adenylate cyclase-associated CAP, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007010	Biological Process	cytoskeleton organization
GO:0003779	Molecular Function	actin binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
KLGIRRPLPS YYDSSLLDGS TTSKNILSER NRRRKLNERL FALRSVVPNI SKKPDLAGLA 60 EFFKPLNEVT MKANALTGGR RSDFFNHLKA TADSLSTLAW FAFIGKDCGM SMPIAHVQES 120 WQMAKFYNNK VLVEYRNKDP NHVEWAKVIK ELYLTVWSVT GKTTTSAAPK ASPPPKTSAP 180 GAPAPPPPPP ASLFSSEPSQ ASSSKPKEGM ATVFQEINYG KPVTLAIVVS NFRNIHCSLV 240 FPKLSPSLLF VHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Actin monomer binding protein that accelerates the exchange of ADP for ATP. Regulates the pool of unpolymerized ATP-actin. Key intermediate between actin-depolymerizing factor (ADF)-mediated disassembly and the profilin-based nucleation and elongation machinery. {ECO:0000269\|PubMed:11826305, ECO:0000269\|PubMed:17538023, ECO:0000269\|PubMed:17635992}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	1e-165	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	1e-165	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008457926.1	1e-79	PREDICTED: cyclase-associated protein 1-like
Swissprot	O65902	6e-59	ACAP1_ARATH; Cyclase-associated protein 1
TrEMBL	A0A1S3C7X5	2e-78	A0A1S3C7X5_CUCME; Adenylyl cyclase-associated protein
STRING	XP_008450201.1	1e-105	(Cucumis melo)

Publications ? help Back to Top
Barrero RA,Umeda M,Yamamura S,Uchimiya H Arabidopsis CAP regulates the actin cytoskeleton necessary for plant cell elongation and division. Plant Cell, 2002. 14(1): p. 149-63 [PMID:11826305] Ndimba BK,Chivasa S,Simon WJ,Slabas AR Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometry. Proteomics, 2005. 5(16): p. 4185-96 [PMID:16254930] Chaudhry F,Guérin C,von Witsch M,Blanchoin L,Staiger CJ Identification of Arabidopsis cyclase-associated protein 1 as the first nucleotide exchange factor for plant actin. Mol. Biol. Cell, 2007. 18(8): p. 3002-14 [PMID:17538023] Deeks MJ, et al. Arabidopsis CAP1 - a key regulator of actin organisation and development. J. Cell. Sci., 2007. 120(Pt 15): p. 2609-18 [PMID:17635992] Bai L,Zhou Y,Ma X,Gao L,Song CP Arabidopsis CAP1-mediated ammonium sensing required reactive oxygen species in plant cell growth. Plant Signal Behav, 2014. 9(8): p. e29582 [PMID:25763633]