PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019715P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 301aa    MW: 35009.8 Da    PI: 7.3466
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019715P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.3e-35151052101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+  ++++sws++g sfvv+++ efa+++Lp yFkh+nf+SFvRQLn+YgF+k+++e+         weF+++ F +gk++ll++
  MELO3C019715P1  15 FLTKTYEMVDDPMSNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQ---------WEFANEGFIRGKTHLLKS 100
                     9***************************************************************9988.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  MELO3C019715P1 101 IHRRK 105
                     ***98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-37799IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3411104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.4E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVSSEGSSSG APPPFLTKTY EMVDDPMSNS IVSWSQSGFS FVVWNPPEFA QELLPIYFKH  60
NNFSSFVRQL NTYGFRKIDR EQWEFANEGF IRGKTHLLKS IHRRKPMYSH SQSSQGNGGA  120
PLSEQERQEL EHKIKTLYQE KTNLESQLQK HENEKEQIGH QIQRICEKLW RMGHQQKQLI  180
GILGAELEKH EQRKKRKMGK VNELLVEEWT EFERDDLKKK KVNVSPLELM GKLELSLELC  240
EDLLCNVAQV LKEGKEMEVK KEGEMRSGVN DVFWEHFLTE IPGSSKVTEV YLDRRNNVVR  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-25610417129Heat shock factor protein 1
5d5v_B8e-25610417129Heat shock factor protein 1
5d5v_D8e-25610417129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456389.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotQ94J161e-61HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A1S3C3730.0A0A1S3C373_CUCME; heat stress transcription factor A-4c-like
STRINGXP_008456389.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2467433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]