PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019715P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HSF | ||||||||
Protein Properties | Length: 301aa MW: 35009.8 Da PI: 7.3466 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.2 | 7.3e-35 | 15 | 105 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+ ++++sws++g sfvv+++ efa+++Lp yFkh+nf+SFvRQLn+YgF+k+++e+ weF+++ F +gk++ll++ MELO3C019715P1 15 FLTKTYEMVDDPMSNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQ---------WEFANEGFIRGKTHLLKS 100 9***************************************************************9988.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k MELO3C019715P1 101 IHRRK 105 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-37 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.6E-59 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.04E-34 | 11 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.4E-20 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.4E-30 | 15 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-20 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 54 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-20 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MVSSEGSSSG APPPFLTKTY EMVDDPMSNS IVSWSQSGFS FVVWNPPEFA QELLPIYFKH 60 NNFSSFVRQL NTYGFRKIDR EQWEFANEGF IRGKTHLLKS IHRRKPMYSH SQSSQGNGGA 120 PLSEQERQEL EHKIKTLYQE KTNLESQLQK HENEKEQIGH QIQRICEKLW RMGHQQKQLI 180 GILGAELEKH EQRKKRKMGK VNELLVEEWT EFERDDLKKK KVNVSPLELM GKLELSLELC 240 EDLLCNVAQV LKEGKEMEVK KEGEMRSGVN DVFWEHFLTE IPGSSKVTEV YLDRRNNVVR 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-25 | 6 | 104 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-25 | 6 | 104 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-25 | 6 | 104 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681921 | 0.0 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456389.1 | 0.0 | PREDICTED: heat stress transcription factor A-4c-like | ||||
Swissprot | Q94J16 | 1e-61 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | A0A1S3C373 | 0.0 | A0A1S3C373_CUCME; heat stress transcription factor A-4c-like | ||||
STRING | XP_008456389.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24674 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 1e-57 | HSF family protein |
Publications ? help Back to Top | |||
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