PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019679P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 306aa    MW: 34377.6 Da    PI: 6.1848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019679P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.2e-33182239259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYY+Cts++C+vkk+vers+edp +v++tYeg+Hnh 
  MELO3C019679P1 182 EDGYRWRKYGQKAVKNSPFPRSYYKCTSQNCSVKKRVERSSEDPGFVITTYEGKHNHY 239
                     8********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-34168239IPR003657WRKY domain
SuperFamilySSF1182908.11E-29174241IPR003657WRKY domain
PROSITE profilePS5081132.179176241IPR003657WRKY domain
SMARTSM007741.8E-38181240IPR003657WRKY domain
PfamPF031062.9E-26182238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSNEGHDHEK EEDDPYYPQF DPFTHNFHHQ KPFEVPPPLT NPYSEAFDIA PYNVGFYSDF  60
SHASSQYDYH NIFSTPFEMS CSSSEVISSV DDALKKSSSL GRDLSSVVTG EHPLTPNCSS  120
TTCSSDEVVA GGGDSSKSGE VKGFDDKKGE NSKKVDEGKK KEKREKGPRF AFLTKTEIDN  180
LEDGYRWRKY GQKAVKNSPF PRSYYKCTSQ NCSVKKRVER SSEDPGFVIT TYEGKHNHYC  240
PITLRGHNPT GVLPPSVTPP LFPPSPNFFS AESFCENLHQ QYQYGLFQDF INNPSFNNSN  300
QHPSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-271742411077Probable WRKY transcription factor 4
2lex_A1e-271742411077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456349.10.0PREDICTED: probable WRKY transcription factor 12
SwissprotQ8VWJ25e-43WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A1S3C4A40.0A0A1S3C4A4_CUCME; probable WRKY transcription factor 12
STRINGXP_008456349.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2467333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-41WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]