PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C019621P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 316aa MW: 34762.6 Da PI: 8.7086

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C019621P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	50.3	5.4e-16	11	40	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkti+++m+vkgLtl+h+kSHLQk+Rl MELO3C019621P1 11 EATPKTIMRVMGVKGLTLYHLKSHLQKFRL 40 7****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.3E-6	3	41	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-14	8	41	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-10	9	41	IPR006447	Myb domain, plants
Pfam	PF14379	4.0E-21	82	121	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MIFLSHISLA EATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQPHKEFND QSIKDGIRAS 60 ALELQRNSGS SSTLMDRSMN EMHMEVQRRL HEQIEVQRHL QLRIEAQGKY MQSILEKACQ 120 TLAGENMAAA TAGPFKTTSN NMGTTTSLVS DAAIKDFISP HHTFPPFQDM NNLFNSEPPP 180 PPPPLIDCLK KPSPFISGAG KTPIFWPDDL RLQDLGTPSA TLAPAPPPIG GAPDLDSLQL 240 EMYESKPPPP TPLLAVGNNV MNEKKFDMTL KLERPSPPRS GHSDERLNSN NNNNGMANNN 300 NPTMLQPQGR NSSFG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	0.0	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456284.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SAK5	4e-67	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1S3C2G3	0.0	A0A1S3C2G3_CUCME; myb family transcription factor APL-like
STRING	XP_008456284.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	7e-68	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]