PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019554P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-PHD
Protein Properties Length: 947aa    MW: 105130 Da    PI: 4.5988
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019554P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.59.8e-13764814656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++  le+L + F++n yp+++++e LA++lgL+ +qV+ WF N R   +
  MELO3C019554P1 764 RLSQPALERLFASFQENEYPKRATKESLAQELGLNLKQVSKWFENTRWSTR 814
                     6789999****************************************8766 PP
2PHD37.55.6e-13393448151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ Cg+     e++++lCdg C++ fH+ Cl+++l ++++p +   wlC+ C++k
  MELO3C019554P1 393 FCAKCGSkeLSLENDIILCDGiCDRGFHQFCLEPPLLNTDIPPDdeGWLCPGCDCK 448
                     6999**965556********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.09E-13383451IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-12389447IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.95391448IPR019787Zinc finger, PHD-finger
PfamPF006281.5E-10393448IPR019787Zinc finger, PHD-finger
SMARTSM002491.8E-9393446IPR001965Zinc finger, PHD-type
CDDcd155042.88E-27393445No hitNo description
PROSITE patternPS013590394445IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.329756816IPR001356Homeobox domain
SMARTSM003891.2E-10759820IPR001356Homeobox domain
SuperFamilySSF466893.55E-12761815IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-13762810IPR009057Homeodomain-like
CDDcd000866.17E-11763817No hitNo description
PfamPF000462.9E-10764814IPR001356Homeobox domain
PROSITE patternPS000270791814IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MEERDENTGT ESRPNNNAEA VQEAKASDNM KERDGNTYTE SRPNNNAEAA QEGKASDNME  60
ERDENTDTES RPNKIAEAVQ EAKASVEVEV RTCLSNEPMY SGYQELGTTP EFSRKTDGPD  120
EEKAGVQQNM ELGSGYLLSE LSEKDNQTIS NHADNDQVEA GNSLSIDKDT KNLKLSIEDE  180
TTTLLNECSE LPLEDVTKNY IEKMNPPIED LTQITSIQSL ETIPSNSQQL DHKDERFFKS  240
KKKNYKLRSL VSSDRVLRSR TQEKAKAPEP SNDLNNFTAE EEGKRKKKKK RNIQGKGARV  300
DEYSSIRNHL RYLLNRIRYE QSLIEAYSSE GWKGFSSDKL KPEKELQRAS NEIMRRKLKI  360
RDLFQRIDTL CAEGRLSESL FDSEGQIDSE DIFCAKCGSK ELSLENDIIL CDGICDRGFH  420
QFCLEPPLLN TDIPPDDEGW LCPGCDCKDD CLDLLNEFQG SNLSITDGWE KVYPEAAAAA  480
GRNSDDTLGL PSDDSEDGDY DPDIPDTIDQ DNELSSDESS SDQSNSDTSG YASASEGLEV  540
PPNDDQYLGL PSDDSEDNDY DPSVPELDEG DRQESSSSDF TSDSEDLAAL ENNCSSKDDD  600
LVSSLNNTLP VKNTNGRSSG PSKSTLHNEL SSLLDSGLDK DGLEPISGRR QVERLDYKKL  660
HDETYGNVPT ESSDDTYGST LDSSDDRGCD SGTRKRGPKT LVLALSNNGS NDDLTNVKTK  720
RSYKRRTRQK PGAINVNNSV TETPVDTAKS SSSVRQCTSS SNRRLSQPAL ERLFASFQEN  780
EYPKRATKES LAQELGLNLK QVSKWFENTR WSTRHPSSGG KKAKSSSRMS IHLSQASGEL  840
SKNEQESATC FRDTDSNGAR HQDLPMANSV VASCQSGDTG DKKLTTRKTK RGESSATKSR  900
KRKGRSDNTA SNSKDREGSP RPPAKSPKVN ETQTADRFKT RRRRSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290RKKKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456177.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_008456178.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_008456179.10.0PREDICTED: pathogenesis-related homeodomain protein
TrEMBLA0A1S3C2830.0A0A1S3C283_CUCME; pathogenesis-related homeodomain protein
STRINGXP_008456177.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-80Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain