PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019390P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HB-other | ||||||||
Protein Properties | Length: 362aa MW: 39692.4 Da PI: 7.2529 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.5 | 7e-06 | 15 | 53 | 27 | 55 |
HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkkl..........gLterqVkvWFqNrRake 55 +e LA+k ++ +qV +WFqNrR+ MELO3C019390P2 15 REVLVALADKFsesverkgkiAVQMKQVWNWFQNRRYAI 53 5555555555555555555558899***********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.361 | 1 | 56 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 6 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-7 | 9 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 7.2E-41 | 105 | 230 | IPR032001 | SAWADEE domain |
CDD | cd00024 | 0.00707 | 117 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
METILQGHNN TMPAREVLVA LADKFSESVE RKGKIAVQMK QVWNWFQNRR YAIRAKTSKA 60 PGKLAVSPVV QIESTPVRNV PQTVVVPAPT PVGTAKSAPE NPLSEFEAKS GRDGAWYDVA 120 TFLSHRSVES GDPEVLVRFS GFGSEEDEWV NIRRNIRPRS LPCESSECVA VLPGDLILCF 180 QEGKEQALYF DAHVLDTQRR RHDVRGCRCR FLVRYDHDQS EEIVQLRKIC RRPETDYRLQ 240 QLHAVNEAAS IEPSKSGMDS VLLSGQRINF ETPQNPLSKD AALVIPNANP HINAHAQTST 300 QEARNTETNT APITFSSGNH NAPTTFNSAN LAGSSAFSSG IVTNTVSGGS ADNVSDGKLL 360 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 2e-46 | 106 | 234 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-46 | 106 | 234 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-46 | 106 | 234 | 6 | 134 | SHH1 SAWADEE |
4iur_B | 2e-46 | 106 | 234 | 6 | 134 | SHH1 SAWADEE |
4iut_A | 2e-46 | 106 | 234 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-46 | 106 | 234 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-46 | 106 | 234 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-46 | 106 | 234 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-46 | 106 | 234 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-46 | 106 | 234 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 0.0 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456011.1 | 0.0 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
Swissprot | Q8RWJ7 | 1e-123 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A1S3C2X6 | 0.0 | A0A1S3C2X6_CUCME; protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
STRING | XP_008456010.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-107 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |