PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019379P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 229aa    MW: 25034 Da    PI: 8.5636
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019379P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.37.9e-393493261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    k+++l+cprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGg++rknk+ 
  MELO3C019379P1 34 KDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRP 93
                    6899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-253592IPR003851Zinc finger, Dof-type
PfamPF027011.5E-333592IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0123892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDSAHWPQVE VKNMDLEEEE GIKAVVERKA KARKDQILNC PRCNSNNTKF CYYNNYSLSQ  60
PRYFCKSCRR YWTAGGSLRN IPVGGASRKN KRPSANFSLP PSKNNQKNYN NGGGGDDDQG  120
ISQLNINITS CSSTATTTNT AATCCWLSSD NDHMNNQIML RSNGIMSQRE LIPFIPMPAP  180
APPQPTAVSV AALEDFKQLS TIISTDQNGA KLGDAPAFWN GIFGGGSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12734RKAKARKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455989.11e-171PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBLA0A1S3C3F21e-170A0A1S3C3F2_CUCME; dof zinc finger protein DOF1.8-like
STRINGXP_008455989.11e-171(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2448433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-33Dof family protein