PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C019332P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 298aa MW: 33200.1 Da PI: 9.7278

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C019332P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.4	7.4e-33	47	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+Ptd+el+ ++L+ kv ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ MELO3C019332P1 47 LPAGVKFDPTDQELL-QHLEGKVGCDThklllhplI---DefipTIQWEhGICYTHPQKLP-GVRKDGLVRHFFHRPSKAYTTGTRKRRKvhada 136 799**********.99*9999556664432...143333554448******.566666788**************867777 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+++g kk+Lv+y g+++k+ekt+W+mh+y+l MELO3C019332P1 137 ddaggEGETRWHKTGKTRPVLV-GGRVKGYKKILVLYtnYGKQKKPEKTNWIMHQYHL 193 7766655788********.9*********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-37	43	212	IPR003441	NAC domain
PROSITE profile	PS51005	31.966	47	212	IPR003441	NAC domain
Pfam	PF02365	9.0E-15	48	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MTTQFVDKNN NVSGQENSTD NSGSSCPSCG HQIKSRDKGG IHTLPGLPAG VKFDPTDQEL 60 LQHLEGKVGC DTHKLLLHPL IDEFIPTIQW EHGICYTHPQ KLPGVRKDGL VRHFFHRPSK 120 AYTTGTRKRR KVHADADDAG GEGETRWHKT GKTRPVLVGG RVKGYKKILV LYTNYGKQKK 180 PEKTNWIMHQ YHLGSSEEEK DGEIVVSKVF YQTQPRQCGN NSLHKESISL KFRGQKSRNN 240 NGVHDHNNNL NTNPLVDFYN PSFISFESND QNGSSSPRNN SHLIPSFAVH GGSSVVS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681916	0.0	LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455949.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-112	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1S3C1N7	0.0	A0A1S3C1N7_CUCME; NAC domain-containing protein 73-like
STRING	XP_008455949.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-114	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]