PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019321P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | VOZ | ||||||||
Protein Properties | Length: 468aa MW: 52303.1 Da PI: 6.148 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 432.4 | 6.3e-133 | 229 | 445 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaf+gp calwdc+rpaqgs+w+qdycss+h++la+neglpg+ p+lrp+gi++kdg+lfaal+ak+q+kevgip c+gaat+kspwna+el MELO3C019321P1 229 PPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALQAKTQAKEVGIPICDGAATRKSPWNAPEL 323 89********************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 fdl++legetirewl+fdkprrafesgnrkqrslpdysgrgwhesrk vmkefgg+k+syymdpqpss++ewhlyey+i+++d++alyrlelk++ MELO3C019321P1 324 FDLTFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSTLEWHLYEYDITNYDSFALYRLELKHT 418 *********************************************************************************************** PP VOZ 191 dekksakgkvskdsladlqkklgrlta 217 d+kks+kgk+++d+ladlqkk+grlta MELO3C019321P1 419 DTKKSPKGKLAADPLADLQKKMGRLTA 445 *************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MPKGMKSKCQ STSHLLLKEK AKNRVNDLQG IFTNLQNARK ESRTTDVAVL EEQVHQMLRE 60 WNAELHEPSP ASSFVEGSLG SFSQELARLL EHCDEQDDAT STLAESKAEP ELHCVLGSNP 120 SNFVQDGFCI PELQQDSFFG FEECKVSPLD LQNYSFYKSD MATQSNCQSF KLDQNLKQTT 180 VVSKDDMSTL NCHILNSHPE FDYGVLIGPS DVGDFSQDTK PSILPNIAPP PSAFMGPICA 240 LWDCFRPAQG SKWCQDYCSS CHSVLAINEG LPGMIPILRP GGIGFKDGPL FAALQAKTQA 300 KEVGIPICDG AATRKSPWNA PELFDLTFLE GETIREWLYF DKPRRAFESG NRKQRSLPDY 360 SGRGWHESRK LVMKEFGGQK KSYYMDPQPS STLEWHLYEY DITNYDSFAL YRLELKHTDT 420 KKSPKGKLAA DPLADLQKKM GRLTAEGPVE LGQQVKGKMT TKTNNKV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681916 | 0.0 | LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455940.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-166 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1S3C2S3 | 0.0 | A0A1S3C2S3_CUCME; transcription factor VOZ1-like | ||||
STRING | XP_008455940.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-168 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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