PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019250P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 724aa MW: 79508 Da PI: 5.7347 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.5e-20 | 59 | 115 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ MELO3C019250P1 59 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 115 688999************************************************995 PP | |||||||
2 | START | 227 | 5.7e-71 | 250 | 470 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el ++a+ +ep+W++ ++n+de+l++f+++ + ++ ea+r+s+vv+m++ +lve+l+d++ qW++ + +a+tl MELO3C019250P1 250 ELAVAAMEELTRMAQMGEPLWMTTLdgstHMLNEDEYLRTFPRGIGpkpsgFKCEASRESAVVIMNHINLVEILMDVN-QWSTLFSgivsRAMTL 343 57899***********************9**************999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+s+g galq+m++e+q++splvp R+++fvRy++q+g+g+w++vdvS+d ++ p +vR++++pSg+li++++ng+skvtwvehv MELO3C019250P1 344 EVLSTGvagnynGALQVMTSEFQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDDLRPTP----GVRCRRRPSGCLIQEMPNGYSKVTWVEHV 434 ************************************************************99....6**************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+l+++lv+sg+a+gak+wv tl+rqce+ MELO3C019250P1 435 EVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCER 470 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 39 | 114 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-20 | 46 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-20 | 57 | 120 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-18 | 59 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-19 | 59 | 117 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 5.98E-38 | 241 | 472 | No hit | No description |
PROSITE profile | PS50848 | 45.431 | 241 | 473 | IPR002913 | START domain |
CDD | cd08875 | 3.76E-131 | 245 | 469 | No hit | No description |
SMART | SM00234 | 1.3E-67 | 250 | 470 | IPR002913 | START domain |
Pfam | PF01852 | 2.8E-60 | 251 | 470 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.8E-7 | 346 | 439 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.24E-26 | 489 | 715 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MFQPSIMDAH LLPLDIPQNT SESDLARIRD DDFDSATKSG SDNNHELVSG DDQDPRPKKK 60 RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKNQHERH 120 ENTQLRTENE KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR 180 ISAIAAKYVG KPVVNYPLLS PPVPSRPLEL GMANFGPQPG LGGGDIYGSA SDLIRSISAP 240 TEADKPMIIE LAVAAMEELT RMAQMGEPLW MTTLDGSTHM LNEDEYLRTF PRGIGPKPSG 300 FKCEASRESA VVIMNHINLV EILMDVNQWS TLFSGIVSRA MTLEVLSTGV AGNYNGALQV 360 MTSEFQVPSP LVPTRESYFV RYCKQHGDGT WAVVDVSLDD LRPTPGVRCR RRPSGCLIQE 420 MPNGYSKVTW VEHVEVDDRG VHNLYKQLVS SGQAFGAKRW VTTLDRQCER LASAMATNIP 480 TGDVGVITNQ EGRKSMLKLA ERMVISFCAG VSASTTHTWT TLSGTGADDV RVMTRKSIDD 540 PGRPHGIVLS AATSFWLPVP PKRIFDFLRD ENSRSEWDIL SNGGVVQEMA HIANGRDTGN 600 CVSLLRVNSA NSSQSNMLIL QESCTDPTAS FVIYAPVDVV AMNLVLNGGD PDYVALLPSG 660 FAILPDGGGG EGVSGGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASLSC 720 ENA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681916 | 0.0 | LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455853.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A1S3C353 | 0.0 | A0A1S3C353_CUCME; homeobox-leucine zipper protein HDG2-like isoform X2 | ||||
STRING | XP_008455850.1 | 0.0 | (Cucumis melo) | ||||
STRING | XP_004151882.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |