PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019065P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 250aa    MW: 27981.9 Da    PI: 6.9089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019065P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-1475127155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iNs ++ Lr llP+ +   + kKls  ++  +   YI +Lq
  MELO3C019065P2  75 KKLSHNASERDRRKKINSLYSSLRALLPSsD---QMKKLSNPATISRILSYIPELQ 127
                     6789*************************66...9999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.43774126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1574144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1375141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-1375131No hitNo description
PfamPF000101.6E-1175127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-1080132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLAVSSPLFS PHQWQLEDPI SLHHQHNSLF SPFEPSDHSF YLQFPPPPLD PSHDHYPSSA  60
APSPEAVSNV SKMAKKLSHN ASERDRRKKI NSLYSSLRAL LPSSDQMKKL SNPATISRIL  120
SYIPELQQQV EGQMRKKEEL MAAMVGQEVK NDEEKKMKSA ASSSSSIISA SRLSRHEMAI  180
QISTDINGCQ RNYLSEILCC LEEEGLLLLN ASSFESFDGK VFHNLHLQMG SNCKMEPKVL  240
SNMLLEMFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134157RKKEELMAAMVGQEVKNDEEKKMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818780.0LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455703.10.0PREDICTED: transcription factor bHLH100-like
TrEMBLA0A1S3C2720.0A0A1S3C272_CUCME; transcription factor bHLH100-like
STRINGXP_008455703.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-29bHLH family protein