PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019065P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27361.1 Da PI: 6.9127 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8.2e-14 | 75 | 126 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr llP++ ++ Kls ++ + YI +Lq MELO3C019065P1 75 KKLSHNASERDRRKKINSLYSSLRALLPSS---DQMKLSNPATISRILSYIPELQ 126 6789*************************9...9******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.878 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.20E-11 | 75 | 130 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-14 | 75 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-11 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-15 | 75 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-9 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLAVSSPLFS PHQWQLEDPI SLHHQHNSLF SPFEPSDHSF YLQFPPPPLD PSHDHYPSSA 60 APSPEAVSNV SKMAKKLSHN ASERDRRKKI NSLYSSLRAL LPSSDQMKLS NPATISRILS 120 YIPELQQQVE GQMRKKEELM AAMVGQEVKN DEEKKMKSAA SSSSSIISAS RLSRHEMAIQ 180 ISTDINGCQR NYLSEILCCL EEEGLLLLNA SSFESFDGKV FHNLHLQVIF IVYNYISILF 240 FR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 156 | RKKEELMAAMVGQEVKNDEEKKMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681878 | 0.0 | LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455703.1 | 1e-141 | PREDICTED: transcription factor bHLH100-like | ||||
TrEMBL | A0A1S3C272 | 1e-140 | A0A1S3C272_CUCME; transcription factor bHLH100-like | ||||
STRING | XP_008455703.1 | 1e-141 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-26 | bHLH family protein |